Final Multiqc Report

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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.25.2

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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        Final Multiqc Report

        https://github.com/Daylily-Informatics/daylily (BRANCH:* sentb) (TAG:grape-ape.v1) (HASH:18e4f942)
        Project/Budget
        da-us-west-2d-giab-sownsamp-test
        Budget @ Runtime
        $0.0 of $200.0 spent ( 0%)
        Spot Instances
        c6i.32xlarge c7i.48xlarge c7i.metal-48xl m7i.metal-48xl
        Spot Costs per hr
        median: $2.97 mean: $2.79 ( avg cost per vcpu,per min: $0.000242214 )
        FQ->BAM.sort avg Costs
        BAM mrkdup avg Cost
        0 min, costing $0.00
        Results Dir (GB)
        100G

        Report generated on 2025-05-12, 20:03 UTC based on data in: /fsx/analysis_results/ubuntu/ug_ds/daylily/results/day/hg38


        Controls Concordance Report

        Concordance Stats For The GIAB HC Regions For This Sample.

        Showing 0/36 rows and 19/19 columns.
        mqc_idSNPClassSampleTgtRegionSizeTNFNTPFPFscoreSensitivity-RecallSpecificityFDRPPVPrecisionAltIdCmpFootprintAllVarMeanDPCovBinAlignerSNVCaller
        Uds5x_HG006_408622-Z0116_0-ug-sentdug-All
        All
        Uds5x_HG006_408622-Z0116_0
        377,862,616.0
        377,419,684.0
        116,539.0
        326,393.0
        52,181.0
        0.8
        0.7
        1.0
        0.1
        0.9
        0.9
        HG006
        clinvar_genes
        -1.0
        -2.0
        ug
        sentdug
        Uds5x_HG006_408622-Z0116_0-ug-sentdug-DEL_50
        DEL_50
        Uds5x_HG006_408622-Z0116_0
        377,862,616.0
        377,836,691.0
        12,587.0
        13,338.0
        7,020.0
        0.6
        0.5
        1.0
        0.3
        0.7
        0.7
        HG006
        clinvar_genes
        -1.0
        -2.0
        ug
        sentdug
        Uds5x_HG006_408622-Z0116_0-ug-sentdug-DEL_gt50
        DEL_gt50
        Uds5x_HG006_408622-Z0116_0
        377,862,616.0
        377,862,610.0
        6.0
        0.0
        104.0
        0.0
        1.0
        1.0
        0.0
        0.0
        HG006
        clinvar_genes
        -1.0
        -2.0
        ug
        sentdug
        Uds5x_HG006_408622-Z0116_0-ug-sentdug-INS_50
        INS_50
        Uds5x_HG006_408622-Z0116_0
        377,862,616.0
        377,836,732.0
        11,808.0
        14,076.0
        7,619.0
        0.6
        0.5
        1.0
        0.4
        0.6
        0.6
        HG006
        clinvar_genes
        -1.0
        -2.0
        ug
        sentdug
        Uds5x_HG006_408622-Z0116_0-ug-sentdug-INS_gt50
        INS_gt50
        Uds5x_HG006_408622-Z0116_0
        377,862,616.0
        377,862,606.0
        10.0
        0.0
        50.0
        0.0
        1.0
        1.0
        0.0
        0.0
        HG006
        clinvar_genes
        -1.0
        -2.0
        ug
        sentdug
        Uds5x_HG006_408622-Z0116_0-ug-sentdug-Indel_50
        Indel_50
        Uds5x_HG006_408622-Z0116_0
        377,862,616.0
        377,860,872.0
        1,167.0
        577.0
        379.0
        0.4
        0.3
        1.0
        0.4
        0.6
        0.6
        HG006
        clinvar_genes
        -1.0
        -2.0
        ug
        sentdug
        Uds5x_HG006_408622-Z0116_0-ug-sentdug-Indel_gt50
        Indel_gt50
        Uds5x_HG006_408622-Z0116_0
        377,862,616.0
        377,862,540.0
        49.0
        27.0
        28.0
        0.4
        0.4
        1.0
        0.5
        0.5
        0.5
        HG006
        clinvar_genes
        -1.0
        -2.0
        ug
        sentdug
        Uds5x_HG006_408622-Z0116_0-ug-sentdug-SNPts
        SNPts
        Uds5x_HG006_408622-Z0116_0
        377,862,616.0
        377,594,769.0
        61,042.0
        206,805.0
        23,090.0
        0.8
        0.8
        1.0
        0.1
        0.9
        0.9
        HG006
        clinvar_genes
        -1.0
        -2.0
        ug
        sentdug
        Uds5x_HG006_408622-Z0116_0-ug-sentdug-SNPtv
        SNPtv
        Uds5x_HG006_408622-Z0116_0
        377,862,616.0
        377,741,176.0
        29,870.0
        91,570.0
        13,891.0
        0.8
        0.8
        1.0
        0.1
        0.9
        0.9
        HG006
        clinvar_genes
        -1.0
        -2.0
        ug
        sentdug
        Uds10x_HG006_408622-Z0116_0-ug-sentdug-All
        All
        Uds10x_HG006_408622-Z0116_0
        2,497,573,920.0
        2,494,080,806.0
        197,935.0
        3,295,179.0
        21,372.0
        1.0
        0.9
        1.0
        0.0
        1.0
        1.0
        HG006
        giabHC_x_ultima
        -1.0
        -2.0
        ug
        sentdug
        Uds10x_HG006_408622-Z0116_0-ug-sentdug-DEL_50
        DEL_50
        Uds10x_HG006_408622-Z0116_0
        2,497,573,920.0
        2,497,420,816.0
        25,383.0
        127,721.0
        711.0
        0.9
        0.8
        1.0
        0.0
        1.0
        1.0
        HG006
        giabHC_x_ultima
        -1.0
        -2.0
        ug
        sentdug
        Uds10x_HG006_408622-Z0116_0-ug-sentdug-DEL_gt50
        DEL_gt50
        Uds10x_HG006_408622-Z0116_0
        2,497,573,920.0
        2,497,573,919.0
        0.0
        1.0
        6.0
        0.2
        1.0
        1.0
        0.9
        0.1
        0.1
        HG006
        giabHC_x_ultima
        -1.0
        -2.0
        ug
        sentdug
        Uds10x_HG006_408622-Z0116_0-ug-sentdug-INS_50
        INS_50
        Uds10x_HG006_408622-Z0116_0
        2,497,573,920.0
        2,497,427,170.0
        19,401.0
        127,349.0
        4,281.0
        0.9
        0.9
        1.0
        0.0
        1.0
        1.0
        HG006
        giabHC_x_ultima
        -1.0
        -2.0
        ug
        sentdug
        Uds10x_HG006_408622-Z0116_0-ug-sentdug-INS_gt50
        INS_gt50
        Uds10x_HG006_408622-Z0116_0
        2,497,573,920.0
        2,497,573,916.0
        3.0
        1.0
        4.0
        0.2
        0.2
        1.0
        0.8
        0.2
        0.2
        HG006
        giabHC_x_ultima
        -1.0
        -2.0
        ug
        sentdug
        Uds10x_HG006_408622-Z0116_0-ug-sentdug-Indel_50
        Indel_50
        Uds10x_HG006_408622-Z0116_0
        2,497,573,920.0
        2,497,564,707.0
        778.0
        8,435.0
        41.0
        1.0
        0.9
        1.0
        0.0
        1.0
        1.0
        HG006
        giabHC_x_ultima
        -1.0
        -2.0
        ug
        sentdug
        Uds10x_HG006_408622-Z0116_0-ug-sentdug-Indel_gt50
        Indel_gt50
        Uds10x_HG006_408622-Z0116_0
        2,497,573,920.0
        2,497,573,701.0
        15.0
        204.0
        0.0
        1.0
        0.9
        1.0
        0.0
        1.0
        1.0
        HG006
        giabHC_x_ultima
        -1.0
        -2.0
        ug
        sentdug
        Uds10x_HG006_408622-Z0116_0-ug-sentdug-SNPts
        SNPts
        Uds10x_HG006_408622-Z0116_0
        2,497,573,920.0
        2,495,406,672.0
        99,755.0
        2,067,493.0
        8,215.0
        1.0
        1.0
        1.0
        0.0
        1.0
        1.0
        HG006
        giabHC_x_ultima
        -1.0
        -2.0
        ug
        sentdug
        Uds10x_HG006_408622-Z0116_0-ug-sentdug-SNPtv
        SNPtv
        Uds10x_HG006_408622-Z0116_0
        2,497,573,920.0
        2,496,557,345.0
        52,600.0
        963,975.0
        8,114.0
        1.0
        0.9
        1.0
        0.0
        1.0
        1.0
        HG006
        giabHC_x_ultima
        -1.0
        -2.0
        ug
        sentdug
        Uds15x_HG006_408622-Z0116_0-ug-sentdug-All
        All
        Uds15x_HG006_408622-Z0116_0
        3,088,286,401.0
        3,084,449,164.0
        197,388.0
        3,639,849.0
        706,025.0
        0.9
        0.9
        1.0
        0.2
        0.8
        0.8
        HG006
        hg38
        -1.0
        -2.0
        ug
        sentdug
        Uds15x_HG006_408622-Z0116_0-ug-sentdug-DEL_50
        DEL_50
        Uds15x_HG006_408622-Z0116_0
        3,088,286,401.0
        3,088,063,005.0
        56,220.0
        167,176.0
        101,065.0
        0.7
        0.7
        1.0
        0.4
        0.6
        0.6
        HG006
        hg38
        -1.0
        -2.0
        ug
        sentdug
        Uds15x_HG006_408622-Z0116_0-ug-sentdug-DEL_gt50
        DEL_gt50
        Uds15x_HG006_408622-Z0116_0
        3,088,286,401.0
        3,088,286,362.0
        35.0
        4.0
        1,268.0
        0.0
        0.1
        1.0
        1.0
        0.0
        0.0
        HG006
        hg38
        -1.0
        -2.0
        ug
        sentdug
        Uds15x_HG006_408622-Z0116_0-ug-sentdug-INS_50
        INS_50
        Uds15x_HG006_408622-Z0116_0
        3,088,286,401.0
        3,088,063,797.0
        44,509.0
        178,095.0
        103,865.0
        0.7
        0.8
        1.0
        0.4
        0.6
        0.6
        HG006
        hg38
        -1.0
        -2.0
        ug
        sentdug
        Uds15x_HG006_408622-Z0116_0-ug-sentdug-INS_gt50
        INS_gt50
        Uds15x_HG006_408622-Z0116_0
        3,088,286,401.0
        3,088,286,360.0
        28.0
        13.0
        913.0
        0.0
        0.3
        1.0
        1.0
        0.0
        0.0
        HG006
        hg38
        -1.0
        -2.0
        ug
        sentdug
        Uds15x_HG006_408622-Z0116_0-ug-sentdug-Indel_50
        Indel_50
        Uds15x_HG006_408622-Z0116_0
        3,088,286,401.0
        3,088,262,521.0
        7,880.0
        16,000.0
        12,772.0
        0.6
        0.7
        1.0
        0.4
        0.6
        0.6
        HG006
        hg38
        -1.0
        -2.0
        ug
        sentdug
        Uds15x_HG006_408622-Z0116_0-ug-sentdug-Indel_gt50
        Indel_gt50
        Uds15x_HG006_408622-Z0116_0
        3,088,286,401.0
        3,088,285,417.0
        254.0
        730.0
        942.0
        0.5
        0.7
        1.0
        0.6
        0.4
        0.4
        HG006
        hg38
        -1.0
        -2.0
        ug
        sentdug
        Uds15x_HG006_408622-Z0116_0-ug-sentdug-SNPts
        SNPts
        Uds15x_HG006_408622-Z0116_0
        3,088,286,401.0
        3,086,002,916.0
        55,628.0
        2,227,857.0
        281,752.0
        0.9
        1.0
        1.0
        0.1
        0.9
        0.9
        HG006
        hg38
        -1.0
        -2.0
        ug
        sentdug
        Uds15x_HG006_408622-Z0116_0-ug-sentdug-SNPtv
        SNPtv
        Uds15x_HG006_408622-Z0116_0
        3,088,286,401.0
        3,087,203,593.0
        32,834.0
        1,049,974.0
        203,448.0
        0.9
        1.0
        1.0
        0.2
        0.8
        0.8
        HG006
        hg38
        -1.0
        -2.0
        ug
        sentdug
        Uds20x_HG006_408622-Z0116_0-ug-sentdug-All
        All
        Uds20x_HG006_408622-Z0116_0
        377,862,616.0
        377,419,792.0
        19,775.0
        423,049.0
        72,055.0
        0.9
        1.0
        1.0
        0.1
        0.9
        0.9
        HG006
        clinvar_genes
        -1.0
        -2.0
        ug
        sentdug
        Uds20x_HG006_408622-Z0116_0-ug-sentdug-DEL_50
        DEL_50
        Uds20x_HG006_408622-Z0116_0
        377,862,616.0
        377,836,962.0
        5,734.0
        19,920.0
        11,106.0
        0.7
        0.8
        1.0
        0.4
        0.6
        0.6
        HG006
        clinvar_genes
        -1.0
        -2.0
        ug
        sentdug
        Uds20x_HG006_408622-Z0116_0-ug-sentdug-DEL_gt50
        DEL_gt50
        Uds20x_HG006_408622-Z0116_0
        377,862,616.0
        377,862,610.0
        5.0
        1.0
        186.0
        0.0
        0.2
        1.0
        1.0
        0.0
        0.0
        HG006
        clinvar_genes
        -1.0
        -2.0
        ug
        sentdug
        Uds20x_HG006_408622-Z0116_0-ug-sentdug-INS_50
        INS_50
        Uds20x_HG006_408622-Z0116_0
        377,862,616.0
        377,837,153.0
        4,577.0
        20,886.0
        11,242.0
        0.7
        0.8
        1.0
        0.3
        0.7
        0.7
        HG006
        clinvar_genes
        -1.0
        -2.0
        ug
        sentdug
        Uds20x_HG006_408622-Z0116_0-ug-sentdug-INS_gt50
        INS_gt50
        Uds20x_HG006_408622-Z0116_0
        377,862,616.0
        377,862,606.0
        7.0
        3.0
        103.0
        0.1
        0.3
        1.0
        1.0
        0.0
        0.0
        HG006
        clinvar_genes
        -1.0
        -2.0
        ug
        sentdug
        Uds20x_HG006_408622-Z0116_0-ug-sentdug-Indel_50
        Indel_50
        Uds20x_HG006_408622-Z0116_0
        377,862,616.0
        377,860,101.0
        735.0
        1,780.0
        1,612.0
        0.6
        0.7
        1.0
        0.5
        0.5
        0.5
        HG006
        clinvar_genes
        -1.0
        -2.0
        ug
        sentdug
        Uds20x_HG006_408622-Z0116_0-ug-sentdug-Indel_gt50
        Indel_gt50
        Uds20x_HG006_408622-Z0116_0
        377,862,616.0
        377,862,513.0
        21.0
        82.0
        113.0
        0.6
        0.8
        1.0
        0.6
        0.4
        0.4
        HG006
        clinvar_genes
        -1.0
        -2.0
        ug
        sentdug
        Uds20x_HG006_408622-Z0116_0-ug-sentdug-SNPts
        SNPts
        Uds20x_HG006_408622-Z0116_0
        377,862,616.0
        377,594,895.0
        5,465.0
        262,256.0
        29,857.0
        0.9
        1.0
        1.0
        0.1
        0.9
        0.9
        HG006
        clinvar_genes
        -1.0
        -2.0
        ug
        sentdug
        Uds20x_HG006_408622-Z0116_0-ug-sentdug-SNPtv
        SNPtv
        Uds20x_HG006_408622-Z0116_0
        377,862,616.0
        377,741,264.0
        3,231.0
        118,121.0
        17,836.0
        0.9
        1.0
        1.0
        0.1
        0.9
        0.9
        HG006
        clinvar_genes
        -1.0
        -2.0
        ug
        sentdug

        Rules Benchmark Data2

        Showing 0/22 rows and 23/23 columns.
        combined_rulesamplerulesh:m:smax_rssmax_vmsmax_ussmax_pssio_inio_outmean_loadcpu_timehostnameipnproccpu_efficiencyinstance_typeregion_azspot_costsnakemake_threadstask_costrule_prefixrule_suffix
        alignstats_smmary_compile-all.
        all.
        alignstats_smmary_compile
        0.8
        0:00:00
        14.1
        30.6
        6.9
        7.3
        3.7
        0.0
        0.0
        0.0
        ip-10-0-0-216
        52.11.194.193
        8.0
        0.0
        r7i.2xlarge
        us-west-2d
        0.2
        2.0
        0.0
        alignstats_smmary_compile
        NA
        alignstats_summary-all.
        all.
        alignstats_summary
        0.3
        0:00:00
        15.4
        38.6
        6.3
        6.8
        0.0
        0.0
        0.0
        0.0
        ip-10-0-0-216
        52.11.194.193
        8.0
        0.0
        r7i.2xlarge
        us-west-2d
        0.2
        1.0
        0.0
        alignstats_summary
        NA
        ug.alignstats-Uds5x_HG006_408622-Z0116_0.
        Uds5x_HG006_408622-Z0116_0.
        ug.alignstats
        144.4
        0:02:24
        2,057.3
        4,139.5
        2,068.5
        2,069.3
        270.4
        0.0
        276.9
        400.3
        i192-dy-all-3
        10.0.1.102
        192.0
        2.8
        c7i.48xlarge
        us-west-2d
        3.0
        32.0
        0.0
        ug
        alignstats
        ug.alignstats-Uds10x_HG006_408622-Z0116_0.
        Uds10x_HG006_408622-Z0116_0.
        ug.alignstats
        287.3
        0:04:47
        2,019.4
        4,165.5
        2,031.8
        2,032.2
        541.5
        0.0
        294.2
        845.5
        i192-dy-all-2
        10.0.1.32
        192.0
        2.9
        c7i.metal-48xl
        us-west-2d
        2.6
        32.0
        0.0
        ug
        alignstats
        ug.alignstats-Uds15x_HG006_408622-Z0116_0.
        Uds15x_HG006_408622-Z0116_0.
        ug.alignstats
        395.7
        0:06:35
        2,056.5
        4,156.2
        2,069.1
        2,069.7
        353.1
        0.0
        291.3
        1,152.9
        i192-dy-all-3
        10.0.1.102
        192.0
        2.9
        c7i.48xlarge
        us-west-2d
        3.0
        32.0
        0.1
        ug
        alignstats
        ug.alignstats-Uds20x_HG006_408622-Z0116_0.
        Uds20x_HG006_408622-Z0116_0.
        ug.alignstats
        507.1
        0:08:27
        2,017.3
        4,161.9
        2,033.7
        2,034.1
        606.0
        0.1
        305.7
        1,551.1
        i192-dy-all-3
        10.0.1.102
        192.0
        3.1
        c7i.48xlarge
        us-west-2d
        3.0
        32.0
        0.1
        ug
        alignstats
        ug.sentdug.1-24-Uds5x_HG006_408622-Z0116_0.
        Uds5x_HG006_408622-Z0116_0.
        ug.sentdug.1-24
        416.1
        0:06:56
        10,775.7
        26,124.6
        10,330.1
        10,335.4
        11,916.0
        2,784.4
        15,481.1
        33,851.2
        i192-dy-all-5
        10.0.1.93
        192.0
        81.3
        c7i.metal-48xl
        us-west-2d
        2.6
        192.0
        0.3
        ug
        sentdug.1-24
        ug.sentdug.1-24-Uds10x_HG006_408622-Z0116_0.
        Uds10x_HG006_408622-Z0116_0.
        ug.sentdug.1-24
        746.0
        0:12:25
        12,294.2
        32,972.1
        11,678.6
        11,684.0
        21,030.0
        3,671.3
        14,927.0
        42,863.2
        i192-dy-all-6
        10.0.1.190
        192.0
        57.5
        c7i.metal-48xl
        us-west-2d
        2.6
        192.0
        0.5
        ug
        sentdug.1-24
        ug.sentdug.1-24-Uds15x_HG006_408622-Z0116_0.
        Uds15x_HG006_408622-Z0116_0.
        ug.sentdug.1-24
        1,018.9
        0:16:58
        13,230.8
        40,067.1
        13,192.4
        13,197.8
        715.8
        3,683.2
        15,284.7
        49,028.2
        i192-dy-all-2
        10.0.1.32
        192.0
        48.1
        c7i.metal-48xl
        us-west-2d
        2.6
        192.0
        0.7
        ug
        sentdug.1-24
        ug.sentdug.1-24-Uds20x_HG006_408622-Z0116_0.
        Uds20x_HG006_408622-Z0116_0.
        ug.sentdug.1-24
        1,375.5
        0:22:55
        14,233.9
        44,677.1
        14,222.9
        14,226.8
        42,171.5
        4,122.3
        15,932.8
        54,297.3
        i192-dy-all-5
        10.0.1.159
        192.0
        39.5
        c7i.metal-48xl
        us-west-2d
        2.6
        192.0
        1.0
        ug
        sentdug.1-24
        ug.sentdug.concat.fofn-Uds5x_HG006_408622-Z0116_0.
        Uds5x_HG006_408622-Z0116_0.
        ug.sentdug.concat.fofn
        0.4
        0:00:00
        15.4
        38.7
        6.5
        7.0
        0.0
        0.0
        0.0
        0.0
        ip-10-0-0-216
        52.11.194.193
        8.0
        0.0
        r7i.2xlarge
        us-west-2d
        0.2
        1.0
        0.0
        ug
        sentdug.concat.fofn
        ug.sentdug.concat.fofn-Uds10x_HG006_408622-Z0116_0.
        Uds10x_HG006_408622-Z0116_0.
        ug.sentdug.concat.fofn
        0.3
        0:00:00
        3.2
        7.7
        0.1
        0.3
        0.0
        0.0
        0.0
        0.0
        ip-10-0-0-216
        52.11.194.193
        8.0
        0.0
        r7i.2xlarge
        us-west-2d
        0.2
        1.0
        0.0
        ug
        sentdug.concat.fofn
        ug.sentdug.concat.fofn-Uds15x_HG006_408622-Z0116_0.
        Uds15x_HG006_408622-Z0116_0.
        ug.sentdug.concat.fofn
        0.4
        0:00:00
        3.4
        7.7
        0.1
        0.3
        0.0
        0.0
        0.0
        0.0
        ip-10-0-0-216
        52.11.194.193
        8.0
        0.0
        r7i.2xlarge
        us-west-2d
        0.2
        1.0
        0.0
        ug
        sentdug.concat.fofn
        ug.sentdug.concat.fofn-Uds20x_HG006_408622-Z0116_0.
        Uds20x_HG006_408622-Z0116_0.
        ug.sentdug.concat.fofn
        0.4
        0:00:00
        3.2
        7.7
        0.1
        0.3
        0.0
        0.0
        0.0
        0.0
        ip-10-0-0-216
        52.11.194.193
        8.0
        0.0
        r7i.2xlarge
        us-west-2d
        0.2
        1.0
        0.0
        ug
        sentdug.concat.fofn
        ug.sentdug.concordance-Uds5x_HG006_408622-Z0116_0.
        Uds5x_HG006_408622-Z0116_0.
        ug.sentdug.concordance
        2,023.7
        0:33:43
        77,339.2
        364,649.9
        77,391.8
        77,392.8
        3,638.0
        8,138.3
        111.3
        377.1
        i192-dy-all-9
        10.0.1.108
        192.0
        0.2
        c7i.metal-48xl
        us-west-2d
        2.6
        96.0
        0.7
        ug
        sentdug.concordance
        ug.sentdug.concordance-Uds10x_HG006_408622-Z0116_0.
        Uds10x_HG006_408622-Z0116_0.
        ug.sentdug.concordance
        2,174.5
        0:36:14
        70,503.9
        364,651.7
        70,553.0
        70,554.3
        1,807.8
        10,286.8
        63.3
        331.9
        i192-dy-all-2
        10.0.1.32
        192.0
        0.2
        c7i.metal-48xl
        us-west-2d
        2.6
        96.0
        0.8
        ug
        sentdug.concordance
        ug.sentdug.concordance-Uds15x_HG006_408622-Z0116_0.
        Uds15x_HG006_408622-Z0116_0.
        ug.sentdug.concordance
        2,262.6
        0:37:42
        74,148.7
        364,649.9
        74,165.4
        74,166.5
        3,336.1
        11,214.3
        80.1
        401.8
        i192-dy-all-2
        10.0.1.32
        192.0
        0.2
        c7i.metal-48xl
        us-west-2d
        2.6
        96.0
        0.8
        ug
        sentdug.concordance
        ug.sentdug.concordance-Uds20x_HG006_408622-Z0116_0.
        Uds20x_HG006_408622-Z0116_0.
        ug.sentdug.concordance
        2,279.9
        0:37:59
        82,337.1
        364,649.9
        82,396.2
        82,397.3
        2,734.2
        11,228.0
        74.4
        316.6
        i192-dy-all-1
        10.0.1.73
        192.0
        0.1
        c7i.metal-48xl
        us-west-2d
        2.6
        96.0
        0.8
        ug
        sentdug.concordance
        ug.sentdug.merge-Uds5x_HG006_408622-Z0116_0.
        Uds5x_HG006_408622-Z0116_0.
        ug.sentdug.merge
        15.7
        0:00:15
        82.1
        13,291.1
        84.1
        84.5
        196.8
        452.0
        222.1
        9.6
        i192-dy-all-9
        10.0.1.108
        192.0
        0.6
        c7i.metal-48xl
        us-west-2d
        2.6
        64.0
        0.0
        ug
        sentdug.merge
        ug.sentdug.merge-Uds10x_HG006_408622-Z0116_0.
        Uds10x_HG006_408622-Z0116_0.
        ug.sentdug.merge
        21.0
        0:00:20
        79.1
        12,523.1
        85.5
        85.8
        0.0
        297.6
        202.3
        49.6
        i192-dy-all-2
        10.0.1.32
        192.0
        2.4
        c7i.metal-48xl
        us-west-2d
        2.6
        64.0
        0.0
        ug
        sentdug.merge
        ug.sentdug.merge-Uds15x_HG006_408622-Z0116_0.
        Uds15x_HG006_408622-Z0116_0.
        ug.sentdug.merge
        23.3
        0:00:23
        76.1
        12,971.1
        84.1
        84.8
        7.7
        304.0
        189.6
        50.0
        i192-dy-all-2
        10.0.1.32
        192.0
        2.1
        c7i.metal-48xl
        us-west-2d
        2.6
        64.0
        0.0
        ug
        sentdug.merge
        ug.sentdug.merge-Uds20x_HG006_408622-Z0116_0.
        Uds20x_HG006_408622-Z0116_0.
        ug.sentdug.merge
        23.4
        0:00:23
        82.1
        13,483.1
        84.1
        84.5
        6.0
        316.5
        188.2
        51.1
        i192-dy-all-1
        10.0.1.73
        192.0
        2.2
        c7i.metal-48xl
        us-west-2d
        2.6
        64.0
        0.0
        ug
        sentdug.merge

        Alignstats Data

        Alignstats Data.

        Showing 0/4 rows and 166/166 columns.
        samplealignerAlignedBasesAlignedBasesPctAlignedReadLengthMeanAlignedReadLengthMedianAlignedReadLengthModeAlignedReadLengthStandardDeviationChimericReadPairPctDeletedBasesDeletedBasesPctDuplicateBasesDuplicateBasesPctDuplicateReadsDuplicateReadsPctFilteredRecordsFilteredRecordsPctInputFileNameInputFileSizeInsertSizeMeanInsertSizeMedianInsertSizeModeInsertSizeStandardDeviationInsertedBasesInsertedBasesPctMappedBasesMappedBasesPctMappedReadsMappedReadsPctMatchedBasesMatchedBasesPctMismatchedBasesMismatchedBasesPctPerfectBasesPerfectBasesPctPerfectReadsPerfectReadsPctQ20BasesQ20BasesPctR1AlignedBasesR1AlignedBasesPctR1AlignedReadLengthMeanR1AlignedReadLengthMedianR1AlignedReadLengthModeR1AlignedReadLengthStandardDeviationR1DeletedBasesR1DeletedBasesPctR1InsertedBasesR1InsertedBasesPctR1MappedBasesR1MappedBasesPctR1MappedReadsR1MappedReadsPctR1MatchedBasesR1MatchedBasesPctR1MismatchedBasesR1MismatchedBasesPctR1PerfectBasesR1PerfectBasesPctR1PerfectReadsR1PerfectReadsPctR1Q20BasesR1Q20BasesPctR1SoftClippedBasesR1SoftClippedBasesPctR1SoftClippedReadsR1SoftClippedReadsPctR1UnmappedBasesR1UnmappedBasesPctR1UnmappedReadsR1UnmappedReadsPctR1UnpairedReadsR1UnpairedReadsPctR1YieldBasesR1YieldReadsR2AlignedBasesR2AlignedBasesPctR2AlignedReadLengthMeanR2AlignedReadLengthMedianR2AlignedReadLengthModeR2AlignedReadLengthStandardDeviationR2DeletedBasesR2DeletedBasesPctR2InsertedBasesR2InsertedBasesPctR2MappedBasesR2MappedBasesPctR2MappedReadsR2MappedReadsPctR2MatchedBasesR2MatchedBasesPctR2MismatchedBasesR2MismatchedBasesPctR2PerfectBasesR2PerfectBasesPctR2PerfectReadsR2PerfectReadsPctR2Q20BasesR2Q20BasesPctR2SoftClippedBasesR2SoftClippedBasesPctR2SoftClippedReadsR2SoftClippedReadsPctR2UnmappedBasesR2UnmappedBasesPctR2UnmappedReadsR2UnmappedReadsPctR2UnpairedReadsR2UnpairedReadsPctR2YieldBasesR2YieldReadsSoftClippedBasesSoftClippedBasesPctSoftClippedReadsSoftClippedReadsPctTotalPairsTotalRecordsTotalSameChrPairsTotalSameChrPairsPctUnfilteredRecordsUnfilteredRecordsPctUnmappedBasesUnmappedBasesPctUnmappedReadsUnmappedReadsPctUnpairedReadsUnpairedReadsPctWgsAlignedReadsWgsAlignedReadsPctWgsCalculatedAlignedReadsWgsCovDuplicateReadsWgsCovDuplicateReadsPctWgsCoverageBases1WgsCoverageBases10WgsCoverageBases100WgsCoverageBases1000WgsCoverageBases1000PctWgsCoverageBases100PctWgsCoverageBases10PctWgsCoverageBases15WgsCoverageBases15PctWgsCoverageBases1PctWgsCoverageBases20WgsCoverageBases20PctWgsCoverageBases30WgsCoverageBases30PctWgsCoverageBases40WgsCoverageBases40PctWgsCoverageBases50WgsCoverageBases500WgsCoverageBases500PctWgsCoverageBases50PctWgsCoverageBases60WgsCoverageBases60PctWgsCoverageBases70WgsCoverageBases70PctWgsCoverageMeanWgsCoverageMedianWgsCoverageStandardDeviationWgsExpectedAlignedReadsWgsFilteredLowBaseQualityBasesWgsFilteredOverlapBasesWgsReadsPairedWgsReadsPairedWithMatesWgsTotalReadsYieldBasesYieldReads
        Uds5x_HG006_408622-Z0116_0.ug
        ug
        17,570,560,240.0
        96.8
        284.3
        302.0
        319.0
        59.5
        100.0
        97,108,169.0
        0.6
        1,592,271,466.0
        8.8
        5,701,784.0
        9.2
        0.0
        0.0
        results/day/hg38/Uds5x_HG006_408622-Z0116_0/align/ug/Uds5x_HG006_408622-Z0116_0.ug.cram
        9,197,137,260.0
        0.0
        0.0
        0.0
        0.0
        81,591,311.0
        0.5
        18,146,728,800.0
        100.0
        61,798,879.0
        100.0
        17,283,374,612.0
        98.4
        205,594,317.0
        1.2
        2,003,581,518.0
        11.0
        7,626,512.0
        12.3
        15,161,068,551.0
        86.3
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        576,168,560.0
        3.2
        16,968,116.0
        27.5
        0.0
        61,798,879.0
        0.0
        0.0
        61,798,879.0
        100.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        61,798,879.0
        100.0
        56,097,095.0
        5,701,784.0
        9.2
        2,885,065,764.0
        203,478,380.0
        541,485.0
        8,402.0
        0.0
        0.0
        6.6
        13,974,320.0
        0.5
        93.1
        5,742,876.0
        0.2
        2,651,174.0
        0.1
        1,685,843.0
        0.1
        1,254,853.0
        41,512.0
        0.0
        0.0
        1,007,382.0
        0.0
        843,949.0
        0.0
        5.2
        5.0
        5.1
        61,798,879.0
        0.0
        0.0
        0.0
        0.0
        61,798,879.0
        18,146,728,800.0
        61,798,879.0
        Uds10x_HG006_408622-Z0116_0.ug
        ug
        35,146,125,437.0
        96.8
        284.3
        302.0
        320.0
        59.5
        100.0
        194,206,200.0
        0.6
        3,183,771,711.0
        8.8
        11,401,089.0
        9.2
        0.0
        0.0
        results/day/hg38/Uds10x_HG006_408622-Z0116_0/align/ug/Uds10x_HG006_408622-Z0116_0.ug.cram
        18,364,050,974.0
        0.0
        0.0
        0.0
        0.0
        163,184,614.0
        0.5
        36,298,760,616.0
        100.0
        123,616,546.0
        100.0
        34,571,739,368.0
        98.4
        411,201,455.0
        1.2
        4,008,106,077.0
        11.0
        15,256,863.0
        12.3
        30,326,685,036.0
        86.3
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        1,152,635,179.0
        3.2
        33,933,973.0
        27.5
        0.0
        123,616,546.0
        0.0
        0.0
        123,616,546.0
        100.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        123,616,546.0
        100.0
        112,215,457.0
        11,401,089.0
        9.2
        2,917,785,302.0
        1,811,687,414.0
        1,239,198.0
        41,197.0
        0.0
        0.0
        58.4
        513,403,219.0
        16.6
        94.1
        70,132,238.0
        2.3
        9,595,055.0
        0.3
        5,282,072.0
        0.2
        3,488,805.0
        146,259.0
        0.0
        0.1
        2,543,206.0
        0.1
        1,996,155.0
        0.1
        10.4
        10.0
        9.7
        123,616,546.0
        0.0
        0.0
        0.0
        0.0
        123,616,546.0
        36,298,760,616.0
        123,616,546.0
        Uds15x_HG006_408622-Z0116_0.ug
        ug
        52,716,941,304.0
        96.8
        284.3
        302.0
        320.0
        59.5
        100.0
        291,253,124.0
        0.6
        4,775,722,124.0
        8.8
        17,101,790.0
        9.2
        0.0
        0.0
        results/day/hg38/Uds15x_HG006_408622-Z0116_0/align/ug/Uds15x_HG006_408622-Z0116_0.ug.cram
        27,515,412,669.0
        0.0
        0.0
        0.0
        0.0
        244,770,005.0
        0.5
        54,445,825,614.0
        100.0
        185,415,400.0
        100.0
        51,855,376,807.0
        98.4
        616,794,492.0
        1.2
        6,011,812,374.0
        11.0
        22,882,890.0
        12.3
        45,488,201,002.0
        86.3
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        1,728,884,310.0
        3.2
        50,892,625.0
        27.4
        0.0
        185,415,400.0
        0.0
        0.0
        185,415,400.0
        100.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        185,415,400.0
        100.0
        168,313,610.0
        17,101,790.0
        9.2
        2,922,294,266.0
        2,628,252,379.0
        2,123,900.0
        102,568.0
        0.0
        0.1
        84.8
        1,844,377,781.0
        59.5
        94.3
        760,677,202.0
        24.5
        37,705,403.0
        1.2
        11,909,661.0
        0.4
        7,353,365.0
        260,290.0
        0.0
        0.2
        5,154,979.0
        0.2
        3,879,233.0
        0.1
        15.6
        16.0
        14.3
        185,415,400.0
        0.0
        0.0
        0.0
        0.0
        185,415,400.0
        54,445,825,614.0
        185,415,400.0
        Uds20x_HG006_408622-Z0116_0.ug
        ug
        70,290,903,249.0
        96.8
        284.3
        302.0
        320.0
        59.5
        100.0
        388,386,739.0
        0.6
        6,366,370,453.0
        8.8
        22,798,119.0
        9.2
        0.0
        0.0
        results/day/hg38/Uds20x_HG006_408622-Z0116_0/align/ug/Uds20x_HG006_408622-Z0116_0.ug.cram
        36,662,560,821.0
        0.0
        0.0
        0.0
        0.0
        326,387,666.0
        0.5
        72,596,307,522.0
        100.0
        247,227,869.0
        100.0
        69,142,075,395.0
        98.4
        822,440,188.0
        1.2
        8,016,671,210.0
        11.0
        30,514,041.0
        12.3
        60,652,180,785.0
        86.3
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
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        0.0
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        0.0
        0.0
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        0.0
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        0.0
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        0.0
        0.0
        0.0
        0.0
        0.0
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        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        2,305,404,273.0
        3.2
        67,855,236.0
        27.4
        0.0
        247,227,869.0
        0.0
        0.0
        247,227,869.0
        100.0
        0.0
        0.0
        0.0
        0.0
        0.0
        0.0
        247,227,869.0
        100.0
        224,429,750.0
        22,798,119.0
        9.2
        2,924,309,145.0
        2,808,916,841.0
        3,400,732.0
        145,765.0
        0.0
        0.1
        90.6
        2,535,914,518.0
        81.8
        94.3
        1,874,459,989.0
        60.5
        311,745,526.0
        10.1
        27,718,220.0
        0.9
        13,421,486.0
        402,671.0
        0.0
        0.4
        8,972,705.0
        0.3
        6,574,855.0
        0.2
        20.8
        21.0
        18.9
        247,227,869.0
        0.0
        0.0
        0.0
        0.0
        247,227,869.0
        72,596,307,522.0
        247,227,869.0