Toolbox

MultiQC Toolbox

Highlight Samples

Regex mode off

Rename Samples

Click here for bulk input.

Paste two columns of a tab-delimited table here (eg. from Excel).

First column should be the old name, second column the new name.

Regex mode off

Show / Hide Samples

Regex mode off

Export Plots

Images
Data

Aspect ratio

Plot scaling

Download the raw data used to create the plots in this report below:

Format:

Note that additional data was saved in multiqc_data when this report was generated.

Choose Plots

If you use plots from MultiQC in a publication or presentation, please cite:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

Save Settings

You can save the toolbox settings for this report to the browser.

Load Settings

Choose a saved report profile from the dropdown box below:

Tool Citations

Please remember to cite the tools that you use in your analysis.

To help with this, you can download publication details of the tools mentioned in this report:

About MultiQC

This report was generated using MultiQC, version 1.25.2

You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

MultiQC is published in Bioinformatics:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

MultiQC is developed by:

Final Multiqc Report

https://github.com/Daylily-Informatics/daylily (BRANCH:* sentb) (TAG:grape-ape.v1) (HASH:18e4f942)

Project/Budget: da-us-west-2d-giab-sownsamp-test
Budget @ Runtime: $0.0 of $200.0 spent ( 0%)
Spot Instances: c6i.32xlarge c7i.48xlarge c7i.metal-48xl m7i.metal-48xl
Spot Costs per hr: median: $2.97 mean: $2.79 ( avg cost per vcpu,per min: $0.000242214 )
FQ->BAM.sort avg Costs
BAM mrkdup avg Cost: 0 min, costing $0.00
Results Dir (GB): 100G

JavaScript Disabled

MultiQC reports use JavaScript for plots and toolbox functions. It looks like you have JavaScript disabled in your web browser. Please note that many of the report functions will not work as intended.

Report generated on 2025-05-12, 20:03 UTC based on data in: /fsx/analysis_results/ubuntu/ug_ds/daylily/results/day/hg38

Controls Concordance Report

Concordance Stats For The GIAB HC Regions For This Sample.

Showing ⁰/₃₆ rows and ¹⁹/₁₉ columns.

mqc_id	SNPClass	Sample	TgtRegionSize	TN	FN	TP	FP	Fscore	Sensitivity-Recall	Specificity	FDR	PPV	Precision	AltId	CmpFootprint	AllVarMeanDP	CovBin	Aligner	SNVCaller
Uds5x_HG006_408622-Z0116_0-ug-sentdug-All	All	Uds5x_HG006_408622-Z0116_0	377,862,616.0	377,419,684.0	116,539.0	326,393.0	52,181.0	0.8	0.7	1.0	0.1	0.9	0.9	HG006	clinvar_genes	-1.0	-2.0	ug	sentdug
Uds5x_HG006_408622-Z0116_0-ug-sentdug-DEL_50	DEL_50	Uds5x_HG006_408622-Z0116_0	377,862,616.0	377,836,691.0	12,587.0	13,338.0	7,020.0	0.6	0.5	1.0	0.3	0.7	0.7	HG006	clinvar_genes	-1.0	-2.0	ug	sentdug
Uds5x_HG006_408622-Z0116_0-ug-sentdug-DEL_gt50	DEL_gt50	Uds5x_HG006_408622-Z0116_0	377,862,616.0	377,862,610.0	6.0	0.0	104.0		0.0	1.0	1.0	0.0	0.0	HG006	clinvar_genes	-1.0	-2.0	ug	sentdug
Uds5x_HG006_408622-Z0116_0-ug-sentdug-INS_50	INS_50	Uds5x_HG006_408622-Z0116_0	377,862,616.0	377,836,732.0	11,808.0	14,076.0	7,619.0	0.6	0.5	1.0	0.4	0.6	0.6	HG006	clinvar_genes	-1.0	-2.0	ug	sentdug
Uds5x_HG006_408622-Z0116_0-ug-sentdug-INS_gt50	INS_gt50	Uds5x_HG006_408622-Z0116_0	377,862,616.0	377,862,606.0	10.0	0.0	50.0		0.0	1.0	1.0	0.0	0.0	HG006	clinvar_genes	-1.0	-2.0	ug	sentdug
Uds5x_HG006_408622-Z0116_0-ug-sentdug-Indel_50	Indel_50	Uds5x_HG006_408622-Z0116_0	377,862,616.0	377,860,872.0	1,167.0	577.0	379.0	0.4	0.3	1.0	0.4	0.6	0.6	HG006	clinvar_genes	-1.0	-2.0	ug	sentdug
Uds5x_HG006_408622-Z0116_0-ug-sentdug-Indel_gt50	Indel_gt50	Uds5x_HG006_408622-Z0116_0	377,862,616.0	377,862,540.0	49.0	27.0	28.0	0.4	0.4	1.0	0.5	0.5	0.5	HG006	clinvar_genes	-1.0	-2.0	ug	sentdug
Uds5x_HG006_408622-Z0116_0-ug-sentdug-SNPts	SNPts	Uds5x_HG006_408622-Z0116_0	377,862,616.0	377,594,769.0	61,042.0	206,805.0	23,090.0	0.8	0.8	1.0	0.1	0.9	0.9	HG006	clinvar_genes	-1.0	-2.0	ug	sentdug
Uds5x_HG006_408622-Z0116_0-ug-sentdug-SNPtv	SNPtv	Uds5x_HG006_408622-Z0116_0	377,862,616.0	377,741,176.0	29,870.0	91,570.0	13,891.0	0.8	0.8	1.0	0.1	0.9	0.9	HG006	clinvar_genes	-1.0	-2.0	ug	sentdug
Uds10x_HG006_408622-Z0116_0-ug-sentdug-All	All	Uds10x_HG006_408622-Z0116_0	2,497,573,920.0	2,494,080,806.0	197,935.0	3,295,179.0	21,372.0	1.0	0.9	1.0	0.0	1.0	1.0	HG006	giabHC_x_ultima	-1.0	-2.0	ug	sentdug
Uds10x_HG006_408622-Z0116_0-ug-sentdug-DEL_50	DEL_50	Uds10x_HG006_408622-Z0116_0	2,497,573,920.0	2,497,420,816.0	25,383.0	127,721.0	711.0	0.9	0.8	1.0	0.0	1.0	1.0	HG006	giabHC_x_ultima	-1.0	-2.0	ug	sentdug
Uds10x_HG006_408622-Z0116_0-ug-sentdug-DEL_gt50	DEL_gt50	Uds10x_HG006_408622-Z0116_0	2,497,573,920.0	2,497,573,919.0	0.0	1.0	6.0	0.2	1.0	1.0	0.9	0.1	0.1	HG006	giabHC_x_ultima	-1.0	-2.0	ug	sentdug
Uds10x_HG006_408622-Z0116_0-ug-sentdug-INS_50	INS_50	Uds10x_HG006_408622-Z0116_0	2,497,573,920.0	2,497,427,170.0	19,401.0	127,349.0	4,281.0	0.9	0.9	1.0	0.0	1.0	1.0	HG006	giabHC_x_ultima	-1.0	-2.0	ug	sentdug
Uds10x_HG006_408622-Z0116_0-ug-sentdug-INS_gt50	INS_gt50	Uds10x_HG006_408622-Z0116_0	2,497,573,920.0	2,497,573,916.0	3.0	1.0	4.0	0.2	0.2	1.0	0.8	0.2	0.2	HG006	giabHC_x_ultima	-1.0	-2.0	ug	sentdug
Uds10x_HG006_408622-Z0116_0-ug-sentdug-Indel_50	Indel_50	Uds10x_HG006_408622-Z0116_0	2,497,573,920.0	2,497,564,707.0	778.0	8,435.0	41.0	1.0	0.9	1.0	0.0	1.0	1.0	HG006	giabHC_x_ultima	-1.0	-2.0	ug	sentdug
Uds10x_HG006_408622-Z0116_0-ug-sentdug-Indel_gt50	Indel_gt50	Uds10x_HG006_408622-Z0116_0	2,497,573,920.0	2,497,573,701.0	15.0	204.0	0.0	1.0	0.9	1.0	0.0	1.0	1.0	HG006	giabHC_x_ultima	-1.0	-2.0	ug	sentdug
Uds10x_HG006_408622-Z0116_0-ug-sentdug-SNPts	SNPts	Uds10x_HG006_408622-Z0116_0	2,497,573,920.0	2,495,406,672.0	99,755.0	2,067,493.0	8,215.0	1.0	1.0	1.0	0.0	1.0	1.0	HG006	giabHC_x_ultima	-1.0	-2.0	ug	sentdug
Uds10x_HG006_408622-Z0116_0-ug-sentdug-SNPtv	SNPtv	Uds10x_HG006_408622-Z0116_0	2,497,573,920.0	2,496,557,345.0	52,600.0	963,975.0	8,114.0	1.0	0.9	1.0	0.0	1.0	1.0	HG006	giabHC_x_ultima	-1.0	-2.0	ug	sentdug
Uds15x_HG006_408622-Z0116_0-ug-sentdug-All	All	Uds15x_HG006_408622-Z0116_0	3,088,286,401.0	3,084,449,164.0	197,388.0	3,639,849.0	706,025.0	0.9	0.9	1.0	0.2	0.8	0.8	HG006	hg38	-1.0	-2.0	ug	sentdug
Uds15x_HG006_408622-Z0116_0-ug-sentdug-DEL_50	DEL_50	Uds15x_HG006_408622-Z0116_0	3,088,286,401.0	3,088,063,005.0	56,220.0	167,176.0	101,065.0	0.7	0.7	1.0	0.4	0.6	0.6	HG006	hg38	-1.0	-2.0	ug	sentdug
Uds15x_HG006_408622-Z0116_0-ug-sentdug-DEL_gt50	DEL_gt50	Uds15x_HG006_408622-Z0116_0	3,088,286,401.0	3,088,286,362.0	35.0	4.0	1,268.0	0.0	0.1	1.0	1.0	0.0	0.0	HG006	hg38	-1.0	-2.0	ug	sentdug
Uds15x_HG006_408622-Z0116_0-ug-sentdug-INS_50	INS_50	Uds15x_HG006_408622-Z0116_0	3,088,286,401.0	3,088,063,797.0	44,509.0	178,095.0	103,865.0	0.7	0.8	1.0	0.4	0.6	0.6	HG006	hg38	-1.0	-2.0	ug	sentdug
Uds15x_HG006_408622-Z0116_0-ug-sentdug-INS_gt50	INS_gt50	Uds15x_HG006_408622-Z0116_0	3,088,286,401.0	3,088,286,360.0	28.0	13.0	913.0	0.0	0.3	1.0	1.0	0.0	0.0	HG006	hg38	-1.0	-2.0	ug	sentdug
Uds15x_HG006_408622-Z0116_0-ug-sentdug-Indel_50	Indel_50	Uds15x_HG006_408622-Z0116_0	3,088,286,401.0	3,088,262,521.0	7,880.0	16,000.0	12,772.0	0.6	0.7	1.0	0.4	0.6	0.6	HG006	hg38	-1.0	-2.0	ug	sentdug
Uds15x_HG006_408622-Z0116_0-ug-sentdug-Indel_gt50	Indel_gt50	Uds15x_HG006_408622-Z0116_0	3,088,286,401.0	3,088,285,417.0	254.0	730.0	942.0	0.5	0.7	1.0	0.6	0.4	0.4	HG006	hg38	-1.0	-2.0	ug	sentdug
Uds15x_HG006_408622-Z0116_0-ug-sentdug-SNPts	SNPts	Uds15x_HG006_408622-Z0116_0	3,088,286,401.0	3,086,002,916.0	55,628.0	2,227,857.0	281,752.0	0.9	1.0	1.0	0.1	0.9	0.9	HG006	hg38	-1.0	-2.0	ug	sentdug
Uds15x_HG006_408622-Z0116_0-ug-sentdug-SNPtv	SNPtv	Uds15x_HG006_408622-Z0116_0	3,088,286,401.0	3,087,203,593.0	32,834.0	1,049,974.0	203,448.0	0.9	1.0	1.0	0.2	0.8	0.8	HG006	hg38	-1.0	-2.0	ug	sentdug
Uds20x_HG006_408622-Z0116_0-ug-sentdug-All	All	Uds20x_HG006_408622-Z0116_0	377,862,616.0	377,419,792.0	19,775.0	423,049.0	72,055.0	0.9	1.0	1.0	0.1	0.9	0.9	HG006	clinvar_genes	-1.0	-2.0	ug	sentdug
Uds20x_HG006_408622-Z0116_0-ug-sentdug-DEL_50	DEL_50	Uds20x_HG006_408622-Z0116_0	377,862,616.0	377,836,962.0	5,734.0	19,920.0	11,106.0	0.7	0.8	1.0	0.4	0.6	0.6	HG006	clinvar_genes	-1.0	-2.0	ug	sentdug
Uds20x_HG006_408622-Z0116_0-ug-sentdug-DEL_gt50	DEL_gt50	Uds20x_HG006_408622-Z0116_0	377,862,616.0	377,862,610.0	5.0	1.0	186.0	0.0	0.2	1.0	1.0	0.0	0.0	HG006	clinvar_genes	-1.0	-2.0	ug	sentdug
Uds20x_HG006_408622-Z0116_0-ug-sentdug-INS_50	INS_50	Uds20x_HG006_408622-Z0116_0	377,862,616.0	377,837,153.0	4,577.0	20,886.0	11,242.0	0.7	0.8	1.0	0.3	0.7	0.7	HG006	clinvar_genes	-1.0	-2.0	ug	sentdug
Uds20x_HG006_408622-Z0116_0-ug-sentdug-INS_gt50	INS_gt50	Uds20x_HG006_408622-Z0116_0	377,862,616.0	377,862,606.0	7.0	3.0	103.0	0.1	0.3	1.0	1.0	0.0	0.0	HG006	clinvar_genes	-1.0	-2.0	ug	sentdug
Uds20x_HG006_408622-Z0116_0-ug-sentdug-Indel_50	Indel_50	Uds20x_HG006_408622-Z0116_0	377,862,616.0	377,860,101.0	735.0	1,780.0	1,612.0	0.6	0.7	1.0	0.5	0.5	0.5	HG006	clinvar_genes	-1.0	-2.0	ug	sentdug
Uds20x_HG006_408622-Z0116_0-ug-sentdug-Indel_gt50	Indel_gt50	Uds20x_HG006_408622-Z0116_0	377,862,616.0	377,862,513.0	21.0	82.0	113.0	0.6	0.8	1.0	0.6	0.4	0.4	HG006	clinvar_genes	-1.0	-2.0	ug	sentdug
Uds20x_HG006_408622-Z0116_0-ug-sentdug-SNPts	SNPts	Uds20x_HG006_408622-Z0116_0	377,862,616.0	377,594,895.0	5,465.0	262,256.0	29,857.0	0.9	1.0	1.0	0.1	0.9	0.9	HG006	clinvar_genes	-1.0	-2.0	ug	sentdug
Uds20x_HG006_408622-Z0116_0-ug-sentdug-SNPtv	SNPtv	Uds20x_HG006_408622-Z0116_0	377,862,616.0	377,741,264.0	3,231.0	118,121.0	17,836.0	0.9	1.0	1.0	0.1	0.9	0.9	HG006	clinvar_genes	-1.0	-2.0	ug	sentdug

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: giab_concordance-plot_table

Sort	Column	Description	ID
\|\|	SNPClass	SNPClass	`SNPClass`
\|\|	Sample	Sample	`Sample`
\|\|	TgtRegionSize	TgtRegionSize	`TgtRegionSize`
\|\|	TN	TN	`TN`
\|\|	FN	FN	`FN`
\|\|	TP	TP	`TP`
\|\|	FP	FP	`FP`
\|\|	Fscore	Fscore	`Fscore`
\|\|	Sensitivity-Recall	Sensitivity-Recall	`Sensitivity_Recall`
\|\|	Specificity	Specificity	`Specificity`
\|\|	FDR	FDR	`FDR`
\|\|	PPV	PPV	`PPV`
\|\|	Precision	Precision	`Precision`
\|\|	AltId	AltId	`AltId`
\|\|	CmpFootprint	CmpFootprint	`CmpFootprint`
\|\|	AllVarMeanDP	AllVarMeanDP	`AllVarMeanDP`
\|\|	CovBin	CovBin	`CovBin`
\|\|	Aligner	Aligner	`Aligner`
\|\|	SNVCaller	SNVCaller	`SNVCaller`

Rules Benchmark Data2

Showing ⁰/₂₂ rows and ²³/₂₃ columns.

combined_rule	sample	rule	s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost	rule_prefix	rule_suffix
alignstats_smmary_compile-all.	all.	alignstats_smmary_compile	0.8	0:00:00	14.1	30.6	6.9	7.3	3.7	0.0	0.0	0.0	ip-10-0-0-216	52.11.194.193	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	2.0	0.0	alignstats_smmary_compile	NA
alignstats_summary-all.	all.	alignstats_summary	0.3	0:00:00	15.4	38.6	6.3	6.8	0.0	0.0	0.0	0.0	ip-10-0-0-216	52.11.194.193	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	alignstats_summary	NA
ug.alignstats-Uds5x_HG006_408622-Z0116_0.	Uds5x_HG006_408622-Z0116_0.	ug.alignstats	144.4	0:02:24	2,057.3	4,139.5	2,068.5	2,069.3	270.4	0.0	276.9	400.3	i192-dy-all-3	10.0.1.102	192.0	2.8	c7i.48xlarge	us-west-2d	3.0	32.0	0.0	ug	alignstats
ug.alignstats-Uds10x_HG006_408622-Z0116_0.	Uds10x_HG006_408622-Z0116_0.	ug.alignstats	287.3	0:04:47	2,019.4	4,165.5	2,031.8	2,032.2	541.5	0.0	294.2	845.5	i192-dy-all-2	10.0.1.32	192.0	2.9	c7i.metal-48xl	us-west-2d	2.6	32.0	0.0	ug	alignstats
ug.alignstats-Uds15x_HG006_408622-Z0116_0.	Uds15x_HG006_408622-Z0116_0.	ug.alignstats	395.7	0:06:35	2,056.5	4,156.2	2,069.1	2,069.7	353.1	0.0	291.3	1,152.9	i192-dy-all-3	10.0.1.102	192.0	2.9	c7i.48xlarge	us-west-2d	3.0	32.0	0.1	ug	alignstats
ug.alignstats-Uds20x_HG006_408622-Z0116_0.	Uds20x_HG006_408622-Z0116_0.	ug.alignstats	507.1	0:08:27	2,017.3	4,161.9	2,033.7	2,034.1	606.0	0.1	305.7	1,551.1	i192-dy-all-3	10.0.1.102	192.0	3.1	c7i.48xlarge	us-west-2d	3.0	32.0	0.1	ug	alignstats
ug.sentdug.1-24-Uds5x_HG006_408622-Z0116_0.	Uds5x_HG006_408622-Z0116_0.	ug.sentdug.1-24	416.1	0:06:56	10,775.7	26,124.6	10,330.1	10,335.4	11,916.0	2,784.4	15,481.1	33,851.2	i192-dy-all-5	10.0.1.93	192.0	81.3	c7i.metal-48xl	us-west-2d	2.6	192.0	0.3	ug	sentdug.1-24
ug.sentdug.1-24-Uds10x_HG006_408622-Z0116_0.	Uds10x_HG006_408622-Z0116_0.	ug.sentdug.1-24	746.0	0:12:25	12,294.2	32,972.1	11,678.6	11,684.0	21,030.0	3,671.3	14,927.0	42,863.2	i192-dy-all-6	10.0.1.190	192.0	57.5	c7i.metal-48xl	us-west-2d	2.6	192.0	0.5	ug	sentdug.1-24
ug.sentdug.1-24-Uds15x_HG006_408622-Z0116_0.	Uds15x_HG006_408622-Z0116_0.	ug.sentdug.1-24	1,018.9	0:16:58	13,230.8	40,067.1	13,192.4	13,197.8	715.8	3,683.2	15,284.7	49,028.2	i192-dy-all-2	10.0.1.32	192.0	48.1	c7i.metal-48xl	us-west-2d	2.6	192.0	0.7	ug	sentdug.1-24
ug.sentdug.1-24-Uds20x_HG006_408622-Z0116_0.	Uds20x_HG006_408622-Z0116_0.	ug.sentdug.1-24	1,375.5	0:22:55	14,233.9	44,677.1	14,222.9	14,226.8	42,171.5	4,122.3	15,932.8	54,297.3	i192-dy-all-5	10.0.1.159	192.0	39.5	c7i.metal-48xl	us-west-2d	2.6	192.0	1.0	ug	sentdug.1-24
ug.sentdug.concat.fofn-Uds5x_HG006_408622-Z0116_0.	Uds5x_HG006_408622-Z0116_0.	ug.sentdug.concat.fofn	0.4	0:00:00	15.4	38.7	6.5	7.0	0.0	0.0	0.0	0.0	ip-10-0-0-216	52.11.194.193	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	ug	sentdug.concat.fofn
ug.sentdug.concat.fofn-Uds10x_HG006_408622-Z0116_0.	Uds10x_HG006_408622-Z0116_0.	ug.sentdug.concat.fofn	0.3	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-216	52.11.194.193	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	ug	sentdug.concat.fofn
ug.sentdug.concat.fofn-Uds15x_HG006_408622-Z0116_0.	Uds15x_HG006_408622-Z0116_0.	ug.sentdug.concat.fofn	0.4	0:00:00	3.4	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-216	52.11.194.193	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	ug	sentdug.concat.fofn
ug.sentdug.concat.fofn-Uds20x_HG006_408622-Z0116_0.	Uds20x_HG006_408622-Z0116_0.	ug.sentdug.concat.fofn	0.4	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-216	52.11.194.193	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	ug	sentdug.concat.fofn
ug.sentdug.concordance-Uds5x_HG006_408622-Z0116_0.	Uds5x_HG006_408622-Z0116_0.	ug.sentdug.concordance	2,023.7	0:33:43	77,339.2	364,649.9	77,391.8	77,392.8	3,638.0	8,138.3	111.3	377.1	i192-dy-all-9	10.0.1.108	192.0	0.2	c7i.metal-48xl	us-west-2d	2.6	96.0	0.7	ug	sentdug.concordance
ug.sentdug.concordance-Uds10x_HG006_408622-Z0116_0.	Uds10x_HG006_408622-Z0116_0.	ug.sentdug.concordance	2,174.5	0:36:14	70,503.9	364,651.7	70,553.0	70,554.3	1,807.8	10,286.8	63.3	331.9	i192-dy-all-2	10.0.1.32	192.0	0.2	c7i.metal-48xl	us-west-2d	2.6	96.0	0.8	ug	sentdug.concordance
ug.sentdug.concordance-Uds15x_HG006_408622-Z0116_0.	Uds15x_HG006_408622-Z0116_0.	ug.sentdug.concordance	2,262.6	0:37:42	74,148.7	364,649.9	74,165.4	74,166.5	3,336.1	11,214.3	80.1	401.8	i192-dy-all-2	10.0.1.32	192.0	0.2	c7i.metal-48xl	us-west-2d	2.6	96.0	0.8	ug	sentdug.concordance
ug.sentdug.concordance-Uds20x_HG006_408622-Z0116_0.	Uds20x_HG006_408622-Z0116_0.	ug.sentdug.concordance	2,279.9	0:37:59	82,337.1	364,649.9	82,396.2	82,397.3	2,734.2	11,228.0	74.4	316.6	i192-dy-all-1	10.0.1.73	192.0	0.1	c7i.metal-48xl	us-west-2d	2.6	96.0	0.8	ug	sentdug.concordance
ug.sentdug.merge-Uds5x_HG006_408622-Z0116_0.	Uds5x_HG006_408622-Z0116_0.	ug.sentdug.merge	15.7	0:00:15	82.1	13,291.1	84.1	84.5	196.8	452.0	222.1	9.6	i192-dy-all-9	10.0.1.108	192.0	0.6	c7i.metal-48xl	us-west-2d	2.6	64.0	0.0	ug	sentdug.merge
ug.sentdug.merge-Uds10x_HG006_408622-Z0116_0.	Uds10x_HG006_408622-Z0116_0.	ug.sentdug.merge	21.0	0:00:20	79.1	12,523.1	85.5	85.8	0.0	297.6	202.3	49.6	i192-dy-all-2	10.0.1.32	192.0	2.4	c7i.metal-48xl	us-west-2d	2.6	64.0	0.0	ug	sentdug.merge
ug.sentdug.merge-Uds15x_HG006_408622-Z0116_0.	Uds15x_HG006_408622-Z0116_0.	ug.sentdug.merge	23.3	0:00:23	76.1	12,971.1	84.1	84.8	7.7	304.0	189.6	50.0	i192-dy-all-2	10.0.1.32	192.0	2.1	c7i.metal-48xl	us-west-2d	2.6	64.0	0.0	ug	sentdug.merge
ug.sentdug.merge-Uds20x_HG006_408622-Z0116_0.	Uds20x_HG006_408622-Z0116_0.	ug.sentdug.merge	23.4	0:00:23	82.1	13,483.1	84.1	84.5	6.0	316.5	188.2	51.1	i192-dy-all-1	10.0.1.73	192.0	2.2	c7i.metal-48xl	us-west-2d	2.6	64.0	0.0	ug	sentdug.merge

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: rules_benchmark_data2-section-plot_table

Sort	Column	Description	ID
\|\|	sample	sample	`sample`
\|\|	rule	rule	`rule`
\|\|	s	s	`s`
\|\|	h:m:s	h:m:s	`h_m_s`
\|\|	max_rss	max_rss	`max_rss`
\|\|	max_vms	max_vms	`max_vms`
\|\|	max_uss	max_uss	`max_uss`
\|\|	max_pss	max_pss	`max_pss`
\|\|	io_in	io_in	`io_in`
\|\|	io_out	io_out	`io_out`
\|\|	mean_load	mean_load	`mean_load`
\|\|	cpu_time	cpu_time	`cpu_time`
\|\|	hostname	hostname	`hostname`
\|\|	ip	ip	`ip`
\|\|	nproc	nproc	`nproc`
\|\|	cpu_efficiency	cpu_efficiency	`cpu_efficiency`
\|\|	instance_type	instance_type	`instance_type`
\|\|	region_az	region_az	`region_az`
\|\|	spot_cost	spot_cost	`spot_cost`
\|\|	snakemake_threads	snakemake_threads	`snakemake_threads`
\|\|	task_cost	task_cost	`task_cost`
\|\|	rule_prefix	rule_prefix	`rule_prefix`
\|\|	rule_suffix	rule_suffix	`rule_suffix`

Alignstats Data

Alignstats Data.

Showing ⁰/₄ rows and ¹⁶⁶/₁₆₆ columns.

sample	aligner	AlignedBases	AlignedBasesPct	AlignedReadLengthMean	AlignedReadLengthMedian	AlignedReadLengthMode	AlignedReadLengthStandardDeviation	ChimericReadPairPct	DeletedBases	DeletedBasesPct	DuplicateBases	DuplicateBasesPct	DuplicateReads	DuplicateReadsPct	InputFileName	InputFileSize	InsertedBases	InsertedBasesPct	MappedBases	MappedBasesPct	MappedReads	MappedReadsPct	MatchedBases	MatchedBasesPct	MismatchedBases	MismatchedBasesPct	PerfectBases	PerfectBasesPct	PerfectReads	PerfectReadsPct	Q20Bases	Q20BasesPct	SoftClippedBases	SoftClippedBasesPct	SoftClippedReads	SoftClippedReadsPct	TotalRecords	UnfilteredRecords	UnfilteredRecordsPct	WgsAlignedReads	WgsAlignedReadsPct	WgsCalculatedAlignedReads	WgsCovDuplicateReads	WgsCovDuplicateReadsPct	WgsCoverageBases1	WgsCoverageBases10	WgsCoverageBases100	WgsCoverageBases1000	WgsCoverageBases100Pct	WgsCoverageBases10Pct	WgsCoverageBases15	WgsCoverageBases15Pct	WgsCoverageBases1Pct	WgsCoverageBases20	WgsCoverageBases20Pct	WgsCoverageBases30	WgsCoverageBases30Pct	WgsCoverageBases40	WgsCoverageBases40Pct	WgsCoverageBases50	WgsCoverageBases500	WgsCoverageBases50Pct	WgsCoverageBases60	WgsCoverageBases60Pct	WgsCoverageBases70	WgsCoverageBases70Pct	WgsCoverageMean	WgsCoverageMedian	WgsCoverageStandardDeviation	WgsExpectedAlignedReads	WgsTotalReads	YieldBases	YieldReads
Uds5x_HG006_408622-Z0116_0.ug	ug	17,570,560,240.0	96.8	284.3	302.0	319.0	59.5	100.0	97,108,169.0	0.6	1,592,271,466.0	8.8	5,701,784.0	9.2	results/day/hg38/Uds5x_HG006_408622-Z0116_0/align/ug/Uds5x_HG006_408622-Z0116_0.ug.cram	9,197,137,260.0	81,591,311.0	0.5	18,146,728,800.0	100.0	61,798,879.0	100.0	17,283,374,612.0	98.4	205,594,317.0	1.2	2,003,581,518.0	11.0	7,626,512.0	12.3	15,161,068,551.0	86.3	576,168,560.0	3.2	16,968,116.0	27.5	61,798,879.0	61,798,879.0	100.0	61,798,879.0	100.0	56,097,095.0	5,701,784.0	9.2	2,885,065,764.0	203,478,380.0	541,485.0	8,402.0	0.0	6.6	13,974,320.0	0.5	93.1	5,742,876.0	0.2	2,651,174.0	0.1	1,685,843.0	0.1	1,254,853.0	41,512.0	0.0	1,007,382.0	0.0	843,949.0	0.0	5.2	5.0	5.1	61,798,879.0	61,798,879.0	18,146,728,800.0	61,798,879.0
Uds10x_HG006_408622-Z0116_0.ug	ug	35,146,125,437.0	96.8	284.3	302.0	320.0	59.5	100.0	194,206,200.0	0.6	3,183,771,711.0	8.8	11,401,089.0	9.2	results/day/hg38/Uds10x_HG006_408622-Z0116_0/align/ug/Uds10x_HG006_408622-Z0116_0.ug.cram	18,364,050,974.0	163,184,614.0	0.5	36,298,760,616.0	100.0	123,616,546.0	100.0	34,571,739,368.0	98.4	411,201,455.0	1.2	4,008,106,077.0	11.0	15,256,863.0	12.3	30,326,685,036.0	86.3	1,152,635,179.0	3.2	33,933,973.0	27.5	123,616,546.0	123,616,546.0	100.0	123,616,546.0	100.0	112,215,457.0	11,401,089.0	9.2	2,917,785,302.0	1,811,687,414.0	1,239,198.0	41,197.0	0.0	58.4	513,403,219.0	16.6	94.1	70,132,238.0	2.3	9,595,055.0	0.3	5,282,072.0	0.2	3,488,805.0	146,259.0	0.1	2,543,206.0	0.1	1,996,155.0	0.1	10.4	10.0	9.7	123,616,546.0	123,616,546.0	36,298,760,616.0	123,616,546.0
Uds15x_HG006_408622-Z0116_0.ug	ug	52,716,941,304.0	96.8	284.3	302.0	320.0	59.5	100.0	291,253,124.0	0.6	4,775,722,124.0	8.8	17,101,790.0	9.2	results/day/hg38/Uds15x_HG006_408622-Z0116_0/align/ug/Uds15x_HG006_408622-Z0116_0.ug.cram	27,515,412,669.0	244,770,005.0	0.5	54,445,825,614.0	100.0	185,415,400.0	100.0	51,855,376,807.0	98.4	616,794,492.0	1.2	6,011,812,374.0	11.0	22,882,890.0	12.3	45,488,201,002.0	86.3	1,728,884,310.0	3.2	50,892,625.0	27.4	185,415,400.0	185,415,400.0	100.0	185,415,400.0	100.0	168,313,610.0	17,101,790.0	9.2	2,922,294,266.0	2,628,252,379.0	2,123,900.0	102,568.0	0.1	84.8	1,844,377,781.0	59.5	94.3	760,677,202.0	24.5	37,705,403.0	1.2	11,909,661.0	0.4	7,353,365.0	260,290.0	0.2	5,154,979.0	0.2	3,879,233.0	0.1	15.6	16.0	14.3	185,415,400.0	185,415,400.0	54,445,825,614.0	185,415,400.0
Uds20x_HG006_408622-Z0116_0.ug	ug	70,290,903,249.0	96.8	284.3	302.0	320.0	59.5	100.0	388,386,739.0	0.6	6,366,370,453.0	8.8	22,798,119.0	9.2	results/day/hg38/Uds20x_HG006_408622-Z0116_0/align/ug/Uds20x_HG006_408622-Z0116_0.ug.cram	36,662,560,821.0	326,387,666.0	0.5	72,596,307,522.0	100.0	247,227,869.0	100.0	69,142,075,395.0	98.4	822,440,188.0	1.2	8,016,671,210.0	11.0	30,514,041.0	12.3	60,652,180,785.0	86.3	2,305,404,273.0	3.2	67,855,236.0	27.4	247,227,869.0	247,227,869.0	100.0	247,227,869.0	100.0	224,429,750.0	22,798,119.0	9.2	2,924,309,145.0	2,808,916,841.0	3,400,732.0	145,765.0	0.1	90.6	2,535,914,518.0	81.8	94.3	1,874,459,989.0	60.5	311,745,526.0	10.1	27,718,220.0	0.9	13,421,486.0	402,671.0	0.4	8,972,705.0	0.3	6,574,855.0	0.2	20.8	21.0	18.9	247,227,869.0	247,227,869.0	72,596,307,522.0	247,227,869.0

Toggle navigation v1.25.2

Final Multiqc Report

MultiQC Toolbox

Apply Highlight Samples

Apply Rename Samples

Apply Show / Hide Samples

Export Plots

Choose Plots

Save Settings

Load Settings

Tool Citations

About MultiQC

Final Multiqc Report

Controls Concordance Report

Controls Concordance Report: Columns

Rules Benchmark Data2

Rules Benchmark Data2: Columns

Alignstats Data

v1.25.2

Highlight Samples

Rename Samples

Show / Hide Samples