Final Multiqc Report
https://github.com/Daylily-Informatics/daylily (BRANCH:* sentb) (TAG:grape-ape.v1) (HASH:18e4f942)
- Project/Budget
- da-us-west-2d-giab-sownsamp-test
- Budget @ Runtime
- $0.0 of $200.0 spent ( 0%)
- Spot Instances
- c6i.32xlarge c7i.48xlarge c7i.metal-48xl m7i.metal-48xl
- Spot Costs per hr
- median: $2.97 mean: $2.79 ( avg cost per vcpu,per min: $0.000242214 )
- FQ->BAM.sort avg Costs
- BAM mrkdup avg Cost
- 0 min, costing $0.00
- Results Dir (GB)
- 100G
Report
generated on 2025-05-12, 20:03 UTC
based on data in:
/fsx/analysis_results/ubuntu/ug_ds/daylily/results/day/hg38
Controls Concordance Report
Concordance Stats For The GIAB HC Regions For This Sample.
| mqc_id | SNPClass | Sample | TgtRegionSize | TN | FN | TP | FP | Fscore | Sensitivity-Recall | Specificity | FDR | PPV | Precision | AltId | CmpFootprint | AllVarMeanDP | CovBin | Aligner | SNVCaller |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Uds5x_HG006_408622-Z0116_0-ug-sentdug-All | All | Uds5x_HG006_408622-Z0116_0 | 377,862,616.0 | 377,419,684.0 | 116,539.0 | 326,393.0 | 52,181.0 | 0.8 | 0.7 | 1.0 | 0.1 | 0.9 | 0.9 | HG006 | clinvar_genes | -1.0 | -2.0 | ug | sentdug |
| Uds5x_HG006_408622-Z0116_0-ug-sentdug-DEL_50 | DEL_50 | Uds5x_HG006_408622-Z0116_0 | 377,862,616.0 | 377,836,691.0 | 12,587.0 | 13,338.0 | 7,020.0 | 0.6 | 0.5 | 1.0 | 0.3 | 0.7 | 0.7 | HG006 | clinvar_genes | -1.0 | -2.0 | ug | sentdug |
| Uds5x_HG006_408622-Z0116_0-ug-sentdug-DEL_gt50 | DEL_gt50 | Uds5x_HG006_408622-Z0116_0 | 377,862,616.0 | 377,862,610.0 | 6.0 | 0.0 | 104.0 | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 | HG006 | clinvar_genes | -1.0 | -2.0 | ug | sentdug | |
| Uds5x_HG006_408622-Z0116_0-ug-sentdug-INS_50 | INS_50 | Uds5x_HG006_408622-Z0116_0 | 377,862,616.0 | 377,836,732.0 | 11,808.0 | 14,076.0 | 7,619.0 | 0.6 | 0.5 | 1.0 | 0.4 | 0.6 | 0.6 | HG006 | clinvar_genes | -1.0 | -2.0 | ug | sentdug |
| Uds5x_HG006_408622-Z0116_0-ug-sentdug-INS_gt50 | INS_gt50 | Uds5x_HG006_408622-Z0116_0 | 377,862,616.0 | 377,862,606.0 | 10.0 | 0.0 | 50.0 | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 | HG006 | clinvar_genes | -1.0 | -2.0 | ug | sentdug | |
| Uds5x_HG006_408622-Z0116_0-ug-sentdug-Indel_50 | Indel_50 | Uds5x_HG006_408622-Z0116_0 | 377,862,616.0 | 377,860,872.0 | 1,167.0 | 577.0 | 379.0 | 0.4 | 0.3 | 1.0 | 0.4 | 0.6 | 0.6 | HG006 | clinvar_genes | -1.0 | -2.0 | ug | sentdug |
| Uds5x_HG006_408622-Z0116_0-ug-sentdug-Indel_gt50 | Indel_gt50 | Uds5x_HG006_408622-Z0116_0 | 377,862,616.0 | 377,862,540.0 | 49.0 | 27.0 | 28.0 | 0.4 | 0.4 | 1.0 | 0.5 | 0.5 | 0.5 | HG006 | clinvar_genes | -1.0 | -2.0 | ug | sentdug |
| Uds5x_HG006_408622-Z0116_0-ug-sentdug-SNPts | SNPts | Uds5x_HG006_408622-Z0116_0 | 377,862,616.0 | 377,594,769.0 | 61,042.0 | 206,805.0 | 23,090.0 | 0.8 | 0.8 | 1.0 | 0.1 | 0.9 | 0.9 | HG006 | clinvar_genes | -1.0 | -2.0 | ug | sentdug |
| Uds5x_HG006_408622-Z0116_0-ug-sentdug-SNPtv | SNPtv | Uds5x_HG006_408622-Z0116_0 | 377,862,616.0 | 377,741,176.0 | 29,870.0 | 91,570.0 | 13,891.0 | 0.8 | 0.8 | 1.0 | 0.1 | 0.9 | 0.9 | HG006 | clinvar_genes | -1.0 | -2.0 | ug | sentdug |
| Uds10x_HG006_408622-Z0116_0-ug-sentdug-All | All | Uds10x_HG006_408622-Z0116_0 | 2,497,573,920.0 | 2,494,080,806.0 | 197,935.0 | 3,295,179.0 | 21,372.0 | 1.0 | 0.9 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC_x_ultima | -1.0 | -2.0 | ug | sentdug |
| Uds10x_HG006_408622-Z0116_0-ug-sentdug-DEL_50 | DEL_50 | Uds10x_HG006_408622-Z0116_0 | 2,497,573,920.0 | 2,497,420,816.0 | 25,383.0 | 127,721.0 | 711.0 | 0.9 | 0.8 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC_x_ultima | -1.0 | -2.0 | ug | sentdug |
| Uds10x_HG006_408622-Z0116_0-ug-sentdug-DEL_gt50 | DEL_gt50 | Uds10x_HG006_408622-Z0116_0 | 2,497,573,920.0 | 2,497,573,919.0 | 0.0 | 1.0 | 6.0 | 0.2 | 1.0 | 1.0 | 0.9 | 0.1 | 0.1 | HG006 | giabHC_x_ultima | -1.0 | -2.0 | ug | sentdug |
| Uds10x_HG006_408622-Z0116_0-ug-sentdug-INS_50 | INS_50 | Uds10x_HG006_408622-Z0116_0 | 2,497,573,920.0 | 2,497,427,170.0 | 19,401.0 | 127,349.0 | 4,281.0 | 0.9 | 0.9 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC_x_ultima | -1.0 | -2.0 | ug | sentdug |
| Uds10x_HG006_408622-Z0116_0-ug-sentdug-INS_gt50 | INS_gt50 | Uds10x_HG006_408622-Z0116_0 | 2,497,573,920.0 | 2,497,573,916.0 | 3.0 | 1.0 | 4.0 | 0.2 | 0.2 | 1.0 | 0.8 | 0.2 | 0.2 | HG006 | giabHC_x_ultima | -1.0 | -2.0 | ug | sentdug |
| Uds10x_HG006_408622-Z0116_0-ug-sentdug-Indel_50 | Indel_50 | Uds10x_HG006_408622-Z0116_0 | 2,497,573,920.0 | 2,497,564,707.0 | 778.0 | 8,435.0 | 41.0 | 1.0 | 0.9 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC_x_ultima | -1.0 | -2.0 | ug | sentdug |
| Uds10x_HG006_408622-Z0116_0-ug-sentdug-Indel_gt50 | Indel_gt50 | Uds10x_HG006_408622-Z0116_0 | 2,497,573,920.0 | 2,497,573,701.0 | 15.0 | 204.0 | 0.0 | 1.0 | 0.9 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC_x_ultima | -1.0 | -2.0 | ug | sentdug |
| Uds10x_HG006_408622-Z0116_0-ug-sentdug-SNPts | SNPts | Uds10x_HG006_408622-Z0116_0 | 2,497,573,920.0 | 2,495,406,672.0 | 99,755.0 | 2,067,493.0 | 8,215.0 | 1.0 | 1.0 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC_x_ultima | -1.0 | -2.0 | ug | sentdug |
| Uds10x_HG006_408622-Z0116_0-ug-sentdug-SNPtv | SNPtv | Uds10x_HG006_408622-Z0116_0 | 2,497,573,920.0 | 2,496,557,345.0 | 52,600.0 | 963,975.0 | 8,114.0 | 1.0 | 0.9 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC_x_ultima | -1.0 | -2.0 | ug | sentdug |
| Uds15x_HG006_408622-Z0116_0-ug-sentdug-All | All | Uds15x_HG006_408622-Z0116_0 | 3,088,286,401.0 | 3,084,449,164.0 | 197,388.0 | 3,639,849.0 | 706,025.0 | 0.9 | 0.9 | 1.0 | 0.2 | 0.8 | 0.8 | HG006 | hg38 | -1.0 | -2.0 | ug | sentdug |
| Uds15x_HG006_408622-Z0116_0-ug-sentdug-DEL_50 | DEL_50 | Uds15x_HG006_408622-Z0116_0 | 3,088,286,401.0 | 3,088,063,005.0 | 56,220.0 | 167,176.0 | 101,065.0 | 0.7 | 0.7 | 1.0 | 0.4 | 0.6 | 0.6 | HG006 | hg38 | -1.0 | -2.0 | ug | sentdug |
| Uds15x_HG006_408622-Z0116_0-ug-sentdug-DEL_gt50 | DEL_gt50 | Uds15x_HG006_408622-Z0116_0 | 3,088,286,401.0 | 3,088,286,362.0 | 35.0 | 4.0 | 1,268.0 | 0.0 | 0.1 | 1.0 | 1.0 | 0.0 | 0.0 | HG006 | hg38 | -1.0 | -2.0 | ug | sentdug |
| Uds15x_HG006_408622-Z0116_0-ug-sentdug-INS_50 | INS_50 | Uds15x_HG006_408622-Z0116_0 | 3,088,286,401.0 | 3,088,063,797.0 | 44,509.0 | 178,095.0 | 103,865.0 | 0.7 | 0.8 | 1.0 | 0.4 | 0.6 | 0.6 | HG006 | hg38 | -1.0 | -2.0 | ug | sentdug |
| Uds15x_HG006_408622-Z0116_0-ug-sentdug-INS_gt50 | INS_gt50 | Uds15x_HG006_408622-Z0116_0 | 3,088,286,401.0 | 3,088,286,360.0 | 28.0 | 13.0 | 913.0 | 0.0 | 0.3 | 1.0 | 1.0 | 0.0 | 0.0 | HG006 | hg38 | -1.0 | -2.0 | ug | sentdug |
| Uds15x_HG006_408622-Z0116_0-ug-sentdug-Indel_50 | Indel_50 | Uds15x_HG006_408622-Z0116_0 | 3,088,286,401.0 | 3,088,262,521.0 | 7,880.0 | 16,000.0 | 12,772.0 | 0.6 | 0.7 | 1.0 | 0.4 | 0.6 | 0.6 | HG006 | hg38 | -1.0 | -2.0 | ug | sentdug |
| Uds15x_HG006_408622-Z0116_0-ug-sentdug-Indel_gt50 | Indel_gt50 | Uds15x_HG006_408622-Z0116_0 | 3,088,286,401.0 | 3,088,285,417.0 | 254.0 | 730.0 | 942.0 | 0.5 | 0.7 | 1.0 | 0.6 | 0.4 | 0.4 | HG006 | hg38 | -1.0 | -2.0 | ug | sentdug |
| Uds15x_HG006_408622-Z0116_0-ug-sentdug-SNPts | SNPts | Uds15x_HG006_408622-Z0116_0 | 3,088,286,401.0 | 3,086,002,916.0 | 55,628.0 | 2,227,857.0 | 281,752.0 | 0.9 | 1.0 | 1.0 | 0.1 | 0.9 | 0.9 | HG006 | hg38 | -1.0 | -2.0 | ug | sentdug |
| Uds15x_HG006_408622-Z0116_0-ug-sentdug-SNPtv | SNPtv | Uds15x_HG006_408622-Z0116_0 | 3,088,286,401.0 | 3,087,203,593.0 | 32,834.0 | 1,049,974.0 | 203,448.0 | 0.9 | 1.0 | 1.0 | 0.2 | 0.8 | 0.8 | HG006 | hg38 | -1.0 | -2.0 | ug | sentdug |
| Uds20x_HG006_408622-Z0116_0-ug-sentdug-All | All | Uds20x_HG006_408622-Z0116_0 | 377,862,616.0 | 377,419,792.0 | 19,775.0 | 423,049.0 | 72,055.0 | 0.9 | 1.0 | 1.0 | 0.1 | 0.9 | 0.9 | HG006 | clinvar_genes | -1.0 | -2.0 | ug | sentdug |
| Uds20x_HG006_408622-Z0116_0-ug-sentdug-DEL_50 | DEL_50 | Uds20x_HG006_408622-Z0116_0 | 377,862,616.0 | 377,836,962.0 | 5,734.0 | 19,920.0 | 11,106.0 | 0.7 | 0.8 | 1.0 | 0.4 | 0.6 | 0.6 | HG006 | clinvar_genes | -1.0 | -2.0 | ug | sentdug |
| Uds20x_HG006_408622-Z0116_0-ug-sentdug-DEL_gt50 | DEL_gt50 | Uds20x_HG006_408622-Z0116_0 | 377,862,616.0 | 377,862,610.0 | 5.0 | 1.0 | 186.0 | 0.0 | 0.2 | 1.0 | 1.0 | 0.0 | 0.0 | HG006 | clinvar_genes | -1.0 | -2.0 | ug | sentdug |
| Uds20x_HG006_408622-Z0116_0-ug-sentdug-INS_50 | INS_50 | Uds20x_HG006_408622-Z0116_0 | 377,862,616.0 | 377,837,153.0 | 4,577.0 | 20,886.0 | 11,242.0 | 0.7 | 0.8 | 1.0 | 0.3 | 0.7 | 0.7 | HG006 | clinvar_genes | -1.0 | -2.0 | ug | sentdug |
| Uds20x_HG006_408622-Z0116_0-ug-sentdug-INS_gt50 | INS_gt50 | Uds20x_HG006_408622-Z0116_0 | 377,862,616.0 | 377,862,606.0 | 7.0 | 3.0 | 103.0 | 0.1 | 0.3 | 1.0 | 1.0 | 0.0 | 0.0 | HG006 | clinvar_genes | -1.0 | -2.0 | ug | sentdug |
| Uds20x_HG006_408622-Z0116_0-ug-sentdug-Indel_50 | Indel_50 | Uds20x_HG006_408622-Z0116_0 | 377,862,616.0 | 377,860,101.0 | 735.0 | 1,780.0 | 1,612.0 | 0.6 | 0.7 | 1.0 | 0.5 | 0.5 | 0.5 | HG006 | clinvar_genes | -1.0 | -2.0 | ug | sentdug |
| Uds20x_HG006_408622-Z0116_0-ug-sentdug-Indel_gt50 | Indel_gt50 | Uds20x_HG006_408622-Z0116_0 | 377,862,616.0 | 377,862,513.0 | 21.0 | 82.0 | 113.0 | 0.6 | 0.8 | 1.0 | 0.6 | 0.4 | 0.4 | HG006 | clinvar_genes | -1.0 | -2.0 | ug | sentdug |
| Uds20x_HG006_408622-Z0116_0-ug-sentdug-SNPts | SNPts | Uds20x_HG006_408622-Z0116_0 | 377,862,616.0 | 377,594,895.0 | 5,465.0 | 262,256.0 | 29,857.0 | 0.9 | 1.0 | 1.0 | 0.1 | 0.9 | 0.9 | HG006 | clinvar_genes | -1.0 | -2.0 | ug | sentdug |
| Uds20x_HG006_408622-Z0116_0-ug-sentdug-SNPtv | SNPtv | Uds20x_HG006_408622-Z0116_0 | 377,862,616.0 | 377,741,264.0 | 3,231.0 | 118,121.0 | 17,836.0 | 0.9 | 1.0 | 1.0 | 0.1 | 0.9 | 0.9 | HG006 | clinvar_genes | -1.0 | -2.0 | ug | sentdug |
Rules Benchmark Data2
| combined_rule | sample | rule | s | h:m:s | max_rss | max_vms | max_uss | max_pss | io_in | io_out | mean_load | cpu_time | hostname | ip | nproc | cpu_efficiency | instance_type | region_az | spot_cost | snakemake_threads | task_cost | rule_prefix | rule_suffix |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| alignstats_smmary_compile-all. | all. | alignstats_smmary_compile | 0.8 | 0:00:00 | 14.1 | 30.6 | 6.9 | 7.3 | 3.7 | 0.0 | 0.0 | 0.0 | ip-10-0-0-216 | 52.11.194.193 | 8.0 | 0.0 | r7i.2xlarge | us-west-2d | 0.2 | 2.0 | 0.0 | alignstats_smmary_compile | NA |
| alignstats_summary-all. | all. | alignstats_summary | 0.3 | 0:00:00 | 15.4 | 38.6 | 6.3 | 6.8 | 0.0 | 0.0 | 0.0 | 0.0 | ip-10-0-0-216 | 52.11.194.193 | 8.0 | 0.0 | r7i.2xlarge | us-west-2d | 0.2 | 1.0 | 0.0 | alignstats_summary | NA |
| ug.alignstats-Uds5x_HG006_408622-Z0116_0. | Uds5x_HG006_408622-Z0116_0. | ug.alignstats | 144.4 | 0:02:24 | 2,057.3 | 4,139.5 | 2,068.5 | 2,069.3 | 270.4 | 0.0 | 276.9 | 400.3 | i192-dy-all-3 | 10.0.1.102 | 192.0 | 2.8 | c7i.48xlarge | us-west-2d | 3.0 | 32.0 | 0.0 | ug | alignstats |
| ug.alignstats-Uds10x_HG006_408622-Z0116_0. | Uds10x_HG006_408622-Z0116_0. | ug.alignstats | 287.3 | 0:04:47 | 2,019.4 | 4,165.5 | 2,031.8 | 2,032.2 | 541.5 | 0.0 | 294.2 | 845.5 | i192-dy-all-2 | 10.0.1.32 | 192.0 | 2.9 | c7i.metal-48xl | us-west-2d | 2.6 | 32.0 | 0.0 | ug | alignstats |
| ug.alignstats-Uds15x_HG006_408622-Z0116_0. | Uds15x_HG006_408622-Z0116_0. | ug.alignstats | 395.7 | 0:06:35 | 2,056.5 | 4,156.2 | 2,069.1 | 2,069.7 | 353.1 | 0.0 | 291.3 | 1,152.9 | i192-dy-all-3 | 10.0.1.102 | 192.0 | 2.9 | c7i.48xlarge | us-west-2d | 3.0 | 32.0 | 0.1 | ug | alignstats |
| ug.alignstats-Uds20x_HG006_408622-Z0116_0. | Uds20x_HG006_408622-Z0116_0. | ug.alignstats | 507.1 | 0:08:27 | 2,017.3 | 4,161.9 | 2,033.7 | 2,034.1 | 606.0 | 0.1 | 305.7 | 1,551.1 | i192-dy-all-3 | 10.0.1.102 | 192.0 | 3.1 | c7i.48xlarge | us-west-2d | 3.0 | 32.0 | 0.1 | ug | alignstats |
| ug.sentdug.1-24-Uds5x_HG006_408622-Z0116_0. | Uds5x_HG006_408622-Z0116_0. | ug.sentdug.1-24 | 416.1 | 0:06:56 | 10,775.7 | 26,124.6 | 10,330.1 | 10,335.4 | 11,916.0 | 2,784.4 | 15,481.1 | 33,851.2 | i192-dy-all-5 | 10.0.1.93 | 192.0 | 81.3 | c7i.metal-48xl | us-west-2d | 2.6 | 192.0 | 0.3 | ug | sentdug.1-24 |
| ug.sentdug.1-24-Uds10x_HG006_408622-Z0116_0. | Uds10x_HG006_408622-Z0116_0. | ug.sentdug.1-24 | 746.0 | 0:12:25 | 12,294.2 | 32,972.1 | 11,678.6 | 11,684.0 | 21,030.0 | 3,671.3 | 14,927.0 | 42,863.2 | i192-dy-all-6 | 10.0.1.190 | 192.0 | 57.5 | c7i.metal-48xl | us-west-2d | 2.6 | 192.0 | 0.5 | ug | sentdug.1-24 |
| ug.sentdug.1-24-Uds15x_HG006_408622-Z0116_0. | Uds15x_HG006_408622-Z0116_0. | ug.sentdug.1-24 | 1,018.9 | 0:16:58 | 13,230.8 | 40,067.1 | 13,192.4 | 13,197.8 | 715.8 | 3,683.2 | 15,284.7 | 49,028.2 | i192-dy-all-2 | 10.0.1.32 | 192.0 | 48.1 | c7i.metal-48xl | us-west-2d | 2.6 | 192.0 | 0.7 | ug | sentdug.1-24 |
| ug.sentdug.1-24-Uds20x_HG006_408622-Z0116_0. | Uds20x_HG006_408622-Z0116_0. | ug.sentdug.1-24 | 1,375.5 | 0:22:55 | 14,233.9 | 44,677.1 | 14,222.9 | 14,226.8 | 42,171.5 | 4,122.3 | 15,932.8 | 54,297.3 | i192-dy-all-5 | 10.0.1.159 | 192.0 | 39.5 | c7i.metal-48xl | us-west-2d | 2.6 | 192.0 | 1.0 | ug | sentdug.1-24 |
| ug.sentdug.concat.fofn-Uds5x_HG006_408622-Z0116_0. | Uds5x_HG006_408622-Z0116_0. | ug.sentdug.concat.fofn | 0.4 | 0:00:00 | 15.4 | 38.7 | 6.5 | 7.0 | 0.0 | 0.0 | 0.0 | 0.0 | ip-10-0-0-216 | 52.11.194.193 | 8.0 | 0.0 | r7i.2xlarge | us-west-2d | 0.2 | 1.0 | 0.0 | ug | sentdug.concat.fofn |
| ug.sentdug.concat.fofn-Uds10x_HG006_408622-Z0116_0. | Uds10x_HG006_408622-Z0116_0. | ug.sentdug.concat.fofn | 0.3 | 0:00:00 | 3.2 | 7.7 | 0.1 | 0.3 | 0.0 | 0.0 | 0.0 | 0.0 | ip-10-0-0-216 | 52.11.194.193 | 8.0 | 0.0 | r7i.2xlarge | us-west-2d | 0.2 | 1.0 | 0.0 | ug | sentdug.concat.fofn |
| ug.sentdug.concat.fofn-Uds15x_HG006_408622-Z0116_0. | Uds15x_HG006_408622-Z0116_0. | ug.sentdug.concat.fofn | 0.4 | 0:00:00 | 3.4 | 7.7 | 0.1 | 0.3 | 0.0 | 0.0 | 0.0 | 0.0 | ip-10-0-0-216 | 52.11.194.193 | 8.0 | 0.0 | r7i.2xlarge | us-west-2d | 0.2 | 1.0 | 0.0 | ug | sentdug.concat.fofn |
| ug.sentdug.concat.fofn-Uds20x_HG006_408622-Z0116_0. | Uds20x_HG006_408622-Z0116_0. | ug.sentdug.concat.fofn | 0.4 | 0:00:00 | 3.2 | 7.7 | 0.1 | 0.3 | 0.0 | 0.0 | 0.0 | 0.0 | ip-10-0-0-216 | 52.11.194.193 | 8.0 | 0.0 | r7i.2xlarge | us-west-2d | 0.2 | 1.0 | 0.0 | ug | sentdug.concat.fofn |
| ug.sentdug.concordance-Uds5x_HG006_408622-Z0116_0. | Uds5x_HG006_408622-Z0116_0. | ug.sentdug.concordance | 2,023.7 | 0:33:43 | 77,339.2 | 364,649.9 | 77,391.8 | 77,392.8 | 3,638.0 | 8,138.3 | 111.3 | 377.1 | i192-dy-all-9 | 10.0.1.108 | 192.0 | 0.2 | c7i.metal-48xl | us-west-2d | 2.6 | 96.0 | 0.7 | ug | sentdug.concordance |
| ug.sentdug.concordance-Uds10x_HG006_408622-Z0116_0. | Uds10x_HG006_408622-Z0116_0. | ug.sentdug.concordance | 2,174.5 | 0:36:14 | 70,503.9 | 364,651.7 | 70,553.0 | 70,554.3 | 1,807.8 | 10,286.8 | 63.3 | 331.9 | i192-dy-all-2 | 10.0.1.32 | 192.0 | 0.2 | c7i.metal-48xl | us-west-2d | 2.6 | 96.0 | 0.8 | ug | sentdug.concordance |
| ug.sentdug.concordance-Uds15x_HG006_408622-Z0116_0. | Uds15x_HG006_408622-Z0116_0. | ug.sentdug.concordance | 2,262.6 | 0:37:42 | 74,148.7 | 364,649.9 | 74,165.4 | 74,166.5 | 3,336.1 | 11,214.3 | 80.1 | 401.8 | i192-dy-all-2 | 10.0.1.32 | 192.0 | 0.2 | c7i.metal-48xl | us-west-2d | 2.6 | 96.0 | 0.8 | ug | sentdug.concordance |
| ug.sentdug.concordance-Uds20x_HG006_408622-Z0116_0. | Uds20x_HG006_408622-Z0116_0. | ug.sentdug.concordance | 2,279.9 | 0:37:59 | 82,337.1 | 364,649.9 | 82,396.2 | 82,397.3 | 2,734.2 | 11,228.0 | 74.4 | 316.6 | i192-dy-all-1 | 10.0.1.73 | 192.0 | 0.1 | c7i.metal-48xl | us-west-2d | 2.6 | 96.0 | 0.8 | ug | sentdug.concordance |
| ug.sentdug.merge-Uds5x_HG006_408622-Z0116_0. | Uds5x_HG006_408622-Z0116_0. | ug.sentdug.merge | 15.7 | 0:00:15 | 82.1 | 13,291.1 | 84.1 | 84.5 | 196.8 | 452.0 | 222.1 | 9.6 | i192-dy-all-9 | 10.0.1.108 | 192.0 | 0.6 | c7i.metal-48xl | us-west-2d | 2.6 | 64.0 | 0.0 | ug | sentdug.merge |
| ug.sentdug.merge-Uds10x_HG006_408622-Z0116_0. | Uds10x_HG006_408622-Z0116_0. | ug.sentdug.merge | 21.0 | 0:00:20 | 79.1 | 12,523.1 | 85.5 | 85.8 | 0.0 | 297.6 | 202.3 | 49.6 | i192-dy-all-2 | 10.0.1.32 | 192.0 | 2.4 | c7i.metal-48xl | us-west-2d | 2.6 | 64.0 | 0.0 | ug | sentdug.merge |
| ug.sentdug.merge-Uds15x_HG006_408622-Z0116_0. | Uds15x_HG006_408622-Z0116_0. | ug.sentdug.merge | 23.3 | 0:00:23 | 76.1 | 12,971.1 | 84.1 | 84.8 | 7.7 | 304.0 | 189.6 | 50.0 | i192-dy-all-2 | 10.0.1.32 | 192.0 | 2.1 | c7i.metal-48xl | us-west-2d | 2.6 | 64.0 | 0.0 | ug | sentdug.merge |
| ug.sentdug.merge-Uds20x_HG006_408622-Z0116_0. | Uds20x_HG006_408622-Z0116_0. | ug.sentdug.merge | 23.4 | 0:00:23 | 82.1 | 13,483.1 | 84.1 | 84.5 | 6.0 | 316.5 | 188.2 | 51.1 | i192-dy-all-1 | 10.0.1.73 | 192.0 | 2.2 | c7i.metal-48xl | us-west-2d | 2.6 | 64.0 | 0.0 | ug | sentdug.merge |
Alignstats Data
Alignstats Data.
| sample | aligner | AlignedBases | AlignedBasesPct | AlignedReadLengthMean | AlignedReadLengthMedian | AlignedReadLengthMode | AlignedReadLengthStandardDeviation | ChimericReadPairPct | DeletedBases | DeletedBasesPct | DuplicateBases | DuplicateBasesPct | DuplicateReads | DuplicateReadsPct | FilteredRecords | FilteredRecordsPct | InputFileName | InputFileSize | InsertSizeMean | InsertSizeMedian | InsertSizeMode | InsertSizeStandardDeviation | InsertedBases | InsertedBasesPct | MappedBases | MappedBasesPct | MappedReads | MappedReadsPct | MatchedBases | MatchedBasesPct | MismatchedBases | MismatchedBasesPct | PerfectBases | PerfectBasesPct | PerfectReads | PerfectReadsPct | Q20Bases | Q20BasesPct | R1AlignedBases | R1AlignedBasesPct | R1AlignedReadLengthMean | R1AlignedReadLengthMedian | R1AlignedReadLengthMode | R1AlignedReadLengthStandardDeviation | R1DeletedBases | R1DeletedBasesPct | R1InsertedBases | R1InsertedBasesPct | R1MappedBases | R1MappedBasesPct | R1MappedReads | R1MappedReadsPct | R1MatchedBases | R1MatchedBasesPct | R1MismatchedBases | R1MismatchedBasesPct | R1PerfectBases | R1PerfectBasesPct | R1PerfectReads | R1PerfectReadsPct | R1Q20Bases | R1Q20BasesPct | R1SoftClippedBases | R1SoftClippedBasesPct | R1SoftClippedReads | R1SoftClippedReadsPct | R1UnmappedBases | R1UnmappedBasesPct | R1UnmappedReads | R1UnmappedReadsPct | R1UnpairedReads | R1UnpairedReadsPct | R1YieldBases | R1YieldReads | R2AlignedBases | R2AlignedBasesPct | R2AlignedReadLengthMean | R2AlignedReadLengthMedian | R2AlignedReadLengthMode | R2AlignedReadLengthStandardDeviation | R2DeletedBases | R2DeletedBasesPct | R2InsertedBases | R2InsertedBasesPct | R2MappedBases | R2MappedBasesPct | R2MappedReads | R2MappedReadsPct | R2MatchedBases | R2MatchedBasesPct | R2MismatchedBases | R2MismatchedBasesPct | R2PerfectBases | R2PerfectBasesPct | R2PerfectReads | R2PerfectReadsPct | R2Q20Bases | R2Q20BasesPct | R2SoftClippedBases | R2SoftClippedBasesPct | R2SoftClippedReads | R2SoftClippedReadsPct | R2UnmappedBases | R2UnmappedBasesPct | R2UnmappedReads | R2UnmappedReadsPct | R2UnpairedReads | R2UnpairedReadsPct | R2YieldBases | R2YieldReads | SoftClippedBases | SoftClippedBasesPct | SoftClippedReads | SoftClippedReadsPct | TotalPairs | TotalRecords | TotalSameChrPairs | TotalSameChrPairsPct | UnfilteredRecords | UnfilteredRecordsPct | UnmappedBases | UnmappedBasesPct | UnmappedReads | UnmappedReadsPct | UnpairedReads | UnpairedReadsPct | WgsAlignedReads | WgsAlignedReadsPct | WgsCalculatedAlignedReads | WgsCovDuplicateReads | WgsCovDuplicateReadsPct | WgsCoverageBases1 | WgsCoverageBases10 | WgsCoverageBases100 | WgsCoverageBases1000 | WgsCoverageBases1000Pct | WgsCoverageBases100Pct | WgsCoverageBases10Pct | WgsCoverageBases15 | WgsCoverageBases15Pct | WgsCoverageBases1Pct | WgsCoverageBases20 | WgsCoverageBases20Pct | WgsCoverageBases30 | WgsCoverageBases30Pct | WgsCoverageBases40 | WgsCoverageBases40Pct | WgsCoverageBases50 | WgsCoverageBases500 | WgsCoverageBases500Pct | WgsCoverageBases50Pct | WgsCoverageBases60 | WgsCoverageBases60Pct | WgsCoverageBases70 | WgsCoverageBases70Pct | WgsCoverageMean | WgsCoverageMedian | WgsCoverageStandardDeviation | WgsExpectedAlignedReads | WgsFilteredLowBaseQualityBases | WgsFilteredOverlapBases | WgsReadsPaired | WgsReadsPairedWithMates | WgsTotalReads | YieldBases | YieldReads |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Uds5x_HG006_408622-Z0116_0.ug | ug | 17,570,560,240.0 | 96.8 | 284.3 | 302.0 | 319.0 | 59.5 | 100.0 | 97,108,169.0 | 0.6 | 1,592,271,466.0 | 8.8 | 5,701,784.0 | 9.2 | 0.0 | 0.0 | results/day/hg38/Uds5x_HG006_408622-Z0116_0/align/ug/Uds5x_HG006_408622-Z0116_0.ug.cram | 9,197,137,260.0 | 0.0 | 0.0 | 0.0 | 0.0 | 81,591,311.0 | 0.5 | 18,146,728,800.0 | 100.0 | 61,798,879.0 | 100.0 | 17,283,374,612.0 | 98.4 | 205,594,317.0 | 1.2 | 2,003,581,518.0 | 11.0 | 7,626,512.0 | 12.3 | 15,161,068,551.0 | 86.3 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 576,168,560.0 | 3.2 | 16,968,116.0 | 27.5 | 0.0 | 61,798,879.0 | 0.0 | 0.0 | 61,798,879.0 | 100.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 61,798,879.0 | 100.0 | 56,097,095.0 | 5,701,784.0 | 9.2 | 2,885,065,764.0 | 203,478,380.0 | 541,485.0 | 8,402.0 | 0.0 | 0.0 | 6.6 | 13,974,320.0 | 0.5 | 93.1 | 5,742,876.0 | 0.2 | 2,651,174.0 | 0.1 | 1,685,843.0 | 0.1 | 1,254,853.0 | 41,512.0 | 0.0 | 0.0 | 1,007,382.0 | 0.0 | 843,949.0 | 0.0 | 5.2 | 5.0 | 5.1 | 61,798,879.0 | 0.0 | 0.0 | 0.0 | 0.0 | 61,798,879.0 | 18,146,728,800.0 | 61,798,879.0 |
| Uds10x_HG006_408622-Z0116_0.ug | ug | 35,146,125,437.0 | 96.8 | 284.3 | 302.0 | 320.0 | 59.5 | 100.0 | 194,206,200.0 | 0.6 | 3,183,771,711.0 | 8.8 | 11,401,089.0 | 9.2 | 0.0 | 0.0 | results/day/hg38/Uds10x_HG006_408622-Z0116_0/align/ug/Uds10x_HG006_408622-Z0116_0.ug.cram | 18,364,050,974.0 | 0.0 | 0.0 | 0.0 | 0.0 | 163,184,614.0 | 0.5 | 36,298,760,616.0 | 100.0 | 123,616,546.0 | 100.0 | 34,571,739,368.0 | 98.4 | 411,201,455.0 | 1.2 | 4,008,106,077.0 | 11.0 | 15,256,863.0 | 12.3 | 30,326,685,036.0 | 86.3 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1,152,635,179.0 | 3.2 | 33,933,973.0 | 27.5 | 0.0 | 123,616,546.0 | 0.0 | 0.0 | 123,616,546.0 | 100.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 123,616,546.0 | 100.0 | 112,215,457.0 | 11,401,089.0 | 9.2 | 2,917,785,302.0 | 1,811,687,414.0 | 1,239,198.0 | 41,197.0 | 0.0 | 0.0 | 58.4 | 513,403,219.0 | 16.6 | 94.1 | 70,132,238.0 | 2.3 | 9,595,055.0 | 0.3 | 5,282,072.0 | 0.2 | 3,488,805.0 | 146,259.0 | 0.0 | 0.1 | 2,543,206.0 | 0.1 | 1,996,155.0 | 0.1 | 10.4 | 10.0 | 9.7 | 123,616,546.0 | 0.0 | 0.0 | 0.0 | 0.0 | 123,616,546.0 | 36,298,760,616.0 | 123,616,546.0 |
| Uds15x_HG006_408622-Z0116_0.ug | ug | 52,716,941,304.0 | 96.8 | 284.3 | 302.0 | 320.0 | 59.5 | 100.0 | 291,253,124.0 | 0.6 | 4,775,722,124.0 | 8.8 | 17,101,790.0 | 9.2 | 0.0 | 0.0 | results/day/hg38/Uds15x_HG006_408622-Z0116_0/align/ug/Uds15x_HG006_408622-Z0116_0.ug.cram | 27,515,412,669.0 | 0.0 | 0.0 | 0.0 | 0.0 | 244,770,005.0 | 0.5 | 54,445,825,614.0 | 100.0 | 185,415,400.0 | 100.0 | 51,855,376,807.0 | 98.4 | 616,794,492.0 | 1.2 | 6,011,812,374.0 | 11.0 | 22,882,890.0 | 12.3 | 45,488,201,002.0 | 86.3 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1,728,884,310.0 | 3.2 | 50,892,625.0 | 27.4 | 0.0 | 185,415,400.0 | 0.0 | 0.0 | 185,415,400.0 | 100.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 185,415,400.0 | 100.0 | 168,313,610.0 | 17,101,790.0 | 9.2 | 2,922,294,266.0 | 2,628,252,379.0 | 2,123,900.0 | 102,568.0 | 0.0 | 0.1 | 84.8 | 1,844,377,781.0 | 59.5 | 94.3 | 760,677,202.0 | 24.5 | 37,705,403.0 | 1.2 | 11,909,661.0 | 0.4 | 7,353,365.0 | 260,290.0 | 0.0 | 0.2 | 5,154,979.0 | 0.2 | 3,879,233.0 | 0.1 | 15.6 | 16.0 | 14.3 | 185,415,400.0 | 0.0 | 0.0 | 0.0 | 0.0 | 185,415,400.0 | 54,445,825,614.0 | 185,415,400.0 |
| Uds20x_HG006_408622-Z0116_0.ug | ug | 70,290,903,249.0 | 96.8 | 284.3 | 302.0 | 320.0 | 59.5 | 100.0 | 388,386,739.0 | 0.6 | 6,366,370,453.0 | 8.8 | 22,798,119.0 | 9.2 | 0.0 | 0.0 | results/day/hg38/Uds20x_HG006_408622-Z0116_0/align/ug/Uds20x_HG006_408622-Z0116_0.ug.cram | 36,662,560,821.0 | 0.0 | 0.0 | 0.0 | 0.0 | 326,387,666.0 | 0.5 | 72,596,307,522.0 | 100.0 | 247,227,869.0 | 100.0 | 69,142,075,395.0 | 98.4 | 822,440,188.0 | 1.2 | 8,016,671,210.0 | 11.0 | 30,514,041.0 | 12.3 | 60,652,180,785.0 | 86.3 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2,305,404,273.0 | 3.2 | 67,855,236.0 | 27.4 | 0.0 | 247,227,869.0 | 0.0 | 0.0 | 247,227,869.0 | 100.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 247,227,869.0 | 100.0 | 224,429,750.0 | 22,798,119.0 | 9.2 | 2,924,309,145.0 | 2,808,916,841.0 | 3,400,732.0 | 145,765.0 | 0.0 | 0.1 | 90.6 | 2,535,914,518.0 | 81.8 | 94.3 | 1,874,459,989.0 | 60.5 | 311,745,526.0 | 10.1 | 27,718,220.0 | 0.9 | 13,421,486.0 | 402,671.0 | 0.0 | 0.4 | 8,972,705.0 | 0.3 | 6,574,855.0 | 0.2 | 20.8 | 21.0 | 18.9 | 247,227,869.0 | 0.0 | 0.0 | 0.0 | 0.0 | 247,227,869.0 | 72,596,307,522.0 | 247,227,869.0 |